Re: grdmath problems

Marcelo:


Excellent. We are making progress!


After running "export PATH=$PATH:/usr/src/gmt-4.5.11/bin" I get the same as
you:

osop@osop-displays2:~$ grdmath 1.grd DUP DUP 10 LE 0.65 MUL EXCH DUP DUP
DUP 10 GT EXCH 20 LE MUL EXCH 10 SUB 10 DIV -0.05 MUL 0.65 ADD MUL EXCH DUP
DUP DUP 20 GT EXCH 30 LE MUL EXCH 20 SUB 10 DIV -0.07 MUL 0.60 ADD MUL EXCH
DUP DUP DUP 30 GT EXCH 40 LE MUL EXCH 30 SUB 10 DIV -0.08 MUL 0.53 ADD MUL
EXCH 40 GT 0.45 MUL ADD ADD ADD ADD 686 2.grd DIV EXCH POW MUL = 3.grd
osop@osop-displays2:~$ /usr/src/gmt-4.5.11/bin/grdmath 1.grd DUP DUP 10 LE
0.65 MUL EXCH DUP DUP DUP 10 GT EXCH 20 LE MUL EXCH 10 SUB 10 DIV -0.05 MUL
0.65 ADD MUL EXCH DUP DUP DUP 20 GT EXCH 30 LE MUL EXCH 20 SUB 10 DIV -0.07
MUL 0.60 ADD MUL EXCH DUP DUP DUP 30 GT EXCH 40 LE MUL EXCH 30 SUB 10 DIV
-0.08 MUL 0.53 ADD MUL EXCH 40 GT 0.45 MUL ADD ADD ADD ADD 686 2.grd DIV
EXCH POW MUL = 3.grd
*** buffer overflow detected ***: /usr/src/gmt-4.5.11/bin/grdmath terminated

I am relying on another program that calls grdmath using an explicit path.
So is there a fix to make it work with the explicit path?

Thanks again!


Kind Regards,


*Branden Christensen*
The Seismo Guys Blog: http://www.osop.com.pa/blog/the-seismo-guys/
Take a Virtual Tour: http://www.osop.com.pa/tour
Sign up for the OSOP mailing list:
http://www.osop.com.pa/about/osop-mailing-list/


On Thu, Jan 23, 2014 at 6:02 PM, Marcelo Banik <[email protected]>wrote:

>  Hi Branden,
>
>
>  I didn't execute script siposg4511-1.sh because:
>
> # dirty link creation to find gdal.h
>
> rm -R /usr/local/include
>
> ln -s /usr/include/gdal /usr/local/include
>
>
>  Appears to be much aggressive to my system.
>
>
>  I decide to use the original install_gmt4.sh script, without your minor
> modification, and some minimal modification in your GMT4param.txt to fit my
> system configuration (see attached file). Then from a directory with files:
>
> $ ls
>
> gmt-4.5.11-src.tar.bz2 GMT4param.txt gshhg-gmt-nc4-2.2.4.tar.gz
> install_gmt4.sh
>
>
>  I run the command:
>
> $ sudo sh -c "sh install_gmt4.sh GMT4param.txt" > install.log 2>&1
>
>
>  And did the test:
>
> $ /usr/src/gmt-4.5.11/bin/grdmath -R0/10/0/10 -I1 X = 1.grd
>
> $ /usr/src/gmt-4.5.11/bin/grdmath -R0/10/0/10 -I1 X = 2.grd
>
> $ /usr/src/gmt-4.5.11/bin/grdmath 1.grd DUP DUP 10 LE 0.65 MUL EXCH DUP
> DUP DUP 10 GT EXCH 20 LE MUL EXCH 10 SUB 10 DIV -0.05 MUL 0.65 ADD MUL EXCH
> DUP DUP DUP 20 GT EXCH 30 LE MUL EXCH 20 SUB 10 DIV -0.07 MUL 0.60 ADD MUL
> EXCH DUP DUP DUP 30 GT EXCH 40 LE MUL EXCH 30 SUB 10 DIV -0.08 MUL 0.53 ADD
> MUL EXCH 40 GT 0.45 MUL ADD ADD ADD ADD 686 2.grd DIV EXCH POW MUL = 3.grd
>
> *** buffer overflow detected ***: /usr/src/gmt-4.5.11/bin/grdmath
> terminated
>
>
>  Finally I get your error!
>
>
>  Then I did:
>
> $ export PATH=$PATH:/usr/src/gmt-4.5.11/bin
>
> $ which grdmath
>
> /usr/src/gmt-4.5.11/bin/grdmath
>
>
>  $ grdmath 1.grd DUP DUP 10 LE 0.65 MUL EXCH DUP DUP DUP 10 GT EXCH 20 LE
> MUL EXCH 10 SUB 10 DIV -0.05 MUL 0.65 ADD MUL EXCH DUP DUP DUP 20 GT EXCH
> 30 LE MUL EXCH 20 SUB 10 DIV -0.07 MUL 0.60 ADD MUL EXCH DUP DUP DUP 30 GT
> EXCH 40 LE MUL EXCH 30 SUB 10 DIV -0.08 MUL 0.53 ADD MUL EXCH 40 GT 0.45
> MUL ADD ADD ADD ADD 686 2.grd DIV EXCH POW MUL = 3.grd
>
>
>  And now it works.
>
>
>  For some unknown reason, it fails if an explicit path is used. I don't
> have this problem with my gmt4.5.11 installation. I'm not sure if it have
> some relation with your choice to not use shared lib. I could test it
> later, but first, let us now if including /usr/src/gmt-4.5.11/bin to your
> PATH works.
>
>
>  Regards,
>
>
>  Marcelo
>
>
>
>
> On Thu, Jan 23, 2014 at 2:36 PM, Branden Christensen <
> [email protected]> wrote:
>
>> Marcelo:
>>
>>
>> I also get:
>>
>> e51a8827d9b0ce3f36cfe6be01f24931  gmt-4.5.11-src.tar.bz2
>>
>> Attached is the script I used to install GMT 4.5.11. Unpack this tgz
>> file, cd to usr/src and execute "siposg4511-1.sh".
>>
>>
>> Kind Regards,
>>
>>
>> *Branden Christensen*
>> The Seismo Guys Blog: http://www.osop.com.pa/blog/the-seismo-guys/
>> Take a Virtual Tour: http://www.osop.com.pa/tour
>> Sign up for the OSOP mailing list:
>> http://www.osop.com.pa/about/osop-mailing-list/
>>
>>
>> On Thu, Jan 23, 2014 at 4:07 PM, Marcelo Banik <[email protected]>wrote:
>>
>>>  Hi Branden,
>>>
>>>
>>>  Here I have:
>>>
>>> $ uname -a
>>>
>>> Linux acer 3.2.0-41-generic #66-Ubuntu SMP Thu Apr 25 03:27:11 UTC 2013
>>> x86_64 x86_64 x86_64 GNU/Linux
>>>
>>>
>>>  $ cat /etc/issue
>>>
>>> Ubuntu 12.04.4 LTS \n \l
>>>
>>>
>>>  It isn't identical, but I didn't expect that these minor differences
>>> could be an issue.
>>>
>>>
>>>  From source files, I get:
>>>
>>> $ md5sum *.bz2
>>>
>>> fd4abdbbc5cb48087a12a4c762b87123 gmt-4.5.11-non-gpl-src.tar.bz2
>>>
>>> e51a8827d9b0ce3f36cfe6be01f24931 gmt-4.5.11-src.tar.bz2
>>>
>>>
>>>  Did you get the same values?
>>>
>>>
>>>  Could you send your GMT4param.txt file? I could try to install here
>>> using it, just to try to reproduce your results. I don't expect that it
>>> could change any thing, but I don't know what to do.
>>>
>>>
>>>  I only get a “buffer overflow detected” when I accidentally included
>>> option -Vd, but it don't appear to be your case.
>>>
>>>
>>>  Regards,
>>>
>>>
>>>  Marcelo
>>>
>>>
>>>
>>>
>>> On Thu, Jan 23, 2014 at 1:08 PM, Branden Christensen <
>>> [email protected]> wrote:
>>>
>>>> Hi all:
>>>>
>>>>
>>>> Marcelo, thank you for taking the time to try that.
>>>>
>>>> I just created a new, virgin virtual machine with 12.04:
>>>>
>>>> osop@shakemap:~$ uname -a
>>>> Linux shakemap 3.5.0-23-generic #35~precise1-Ubuntu SMP Fri Jan 25
>>>> 17:13:26 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>>> osop@shakemap:~$ cat /etc/issue
>>>> Ubuntu 12.04.2 LTS \n \l
>>>>
>>>> I then installed GMT 4.5.11 from source.
>>>>
>>>> And then I attempted:
>>>>
>>>> osop@shakemap:~$ /usr/src/gmt-4.5.11/bin/grdmath -R0/10/0/10 -I1 X =
>>>> 1.grd
>>>> osop@shakemap:~$ /usr/src/gmt-4.5.11/bin/grdmath -R0/10/0/10 -I1 X =
>>>> 2.grd
>>>> osop@shakemap:~$  /usr/src/gmt-4.5.11/bin/grdmath 1.grd DUP DUP 10 LE
>>>> 0.65 MUL EXCH DUP DUP DUP 10 GT EXCH 20 LE MUL EXCH 10 SUB 10 DIV -0.05 MUL
>>>> 0.65 ADD MUL EXCH DUP DUP DUP 20 GT EXCH 30 LE MUL EXCH 20 SUB 10 DIV -0.07
>>>> MUL 0.60 ADD MUL EXCH DUP DUP DUP 30 GT EXCH 40 LE MUL EXCH 30 SUB 10 DIV
>>>> -0.08 MUL 0.53 ADD MUL EXCH 40 GT 0.45 MUL ADD ADD ADD ADD 686 2.grd DIV
>>>> EXCH POW MUL = 3.grd
>>>>  *** buffer overflow detected ***: /usr/src/gmt-4.5.11/bin/grdmath
>>>> terminated
>>>>
>>>> So I am getting the same results....
>>>>
>>>>
>>>> Kind Regards,
>>>>
>>>>
>>>>
>>>> *Branden Christensen*
>>>> The Seismo Guys Blog: http://www.osop.com.pa/blog/the-seismo-guys/
>>>> Take a Virtual Tour: http://www.osop.com.pa/tour
>>>> Sign up for the OSOP mailing list:
>>>> http://www.osop.com.pa/about/osop-mailing-list/
>>>>
>>>>
>>>> On Wed, Jan 22, 2014 at 7:59 PM, Marcelo Banik <[email protected]
>>>> > wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> It works fine at my ubuntu 12.04 LTS 64bits GMT 4.5.11 installed from
>>>>> source code.
>>>>>
>>>>> Regards,
>>>>>
>>>>> Marcelo
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Jan 22, 2014 at 5:54 PM, J.J. Green <
>>>>> [email protected]> wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> Sounds like a flakey GMT in Ubuntu, see earlier messages
>>>>>> on this list.  On
>>>>>>
>>>>>>   jjg@flounder ~ $ cat /etc/issue
>>>>>>   Linux Mint 16 Petra \n \l
>>>>>>
>>>>>> with
>>>>>>
>>>>>>   jjg@flounder ~ $ apt-cache policy gmt
>>>>>>   gmt:
>>>>>>     Installed: 4.5.7-2ubuntu1
>>>>>>     Candidate: 4.5.7-2ubuntu1
>>>>>>     Package pin: 4.5.7-2ubuntu1
>>>>>>     Version table:
>>>>>>        4.5.9-1 1001
>>>>>>         500 http://archive.ubuntu.com/ubuntu/ saucy/universe amd64
>>>>>>   Packages
>>>>>>    *** 4.5.7-2ubuntu1 1001
>>>>>>         500 http://archive.ubuntu.com/ubuntu/ raring/universe amd64
>>>>>>   Packages
>>>>>>         100 /var/lib/dpkg/status
>>>>>>
>>>>>> This achieved with
>>>>>>
>>>>>>   jjg@flounder ~ $ cat /etc/apt/preferences.d/pin-gmt4
>>>>>>   Package: gmt
>>>>>>   Pin: release n=raring*
>>>>>>   Pin-Priority: 1001
>>>>>>
>>>>>>   Package: gmt-doc
>>>>>>   Pin: release v=13.04, l=Ubuntu
>>>>>>   Pin-Priority: 1001
>>>>>>
>>>>>>   Package: libgmt4
>>>>>>   Pin: release v=13.04, l=Ubuntu
>>>>>>   Pin-Priority: 1001
>>>>>>
>>>>>>   Package: *
>>>>>>   Pin: release v=13.04, l=Ubuntu
>>>>>>   Pin-Priority: -1
>>>>>>
>>>>>> I get no error for
>>>>>>
>>>>>>   jjg@flounder ~ $ GMT grdmath -R0/10/0/10 -I1 X = 1.grd
>>>>>>   jjg@flounder ~ $ GMT grdmath -R0/10/0/10 -I1 X = 2.grd
>>>>>>   jjg@flounder ~ $ GMT grdmath 1.grd DUP DUP 10 LE 0.65 MUL EXCH DUP
>>>>>> DUP DUP 10 GT EXCH 20 LE MUL EXCH 10 SUB 10 DIV -0.05 MUL 0.65 ADD MUL EXCH
>>>>>> DUP DUP DUP 20 GT EXCH 30 LE MUL EXCH 20 SUB 10 DIV -0.07 MUL 0.60 ADD MUL
>>>>>> EXCH DUP DUP DUP 30 GT EXCH 40 LE MUL EXCH 30 SUB 10 DIV -0.08 MUL 0.53 ADD
>>>>>> MUL EXCH 40 GT 0.45 MUL ADD ADD ADD ADD 686 2.grd DIV EXCH POW MUL = 3.grd
>>>>>>
>>>>>> and
>>>>>>
>>>>>>   jjg@flounder ~ $ ls -l *.grd
>>>>>>   -rw-r--r-- 1 jjg jjg 1240 Jan 22 19:41 1.grd
>>>>>>   -rw-r--r-- 1 jjg jjg 1240 Jan 22 19:41 2.grd
>>>>>>   -rw-r--r-- 1 jjg jjg 1508 Jan 22 19:42 3.grd
>>>>>>
>>>>>> perhaps you could revert to 4.5.7 too
>>>>>>
>>>>>> Cheers
>>>>>>
>>>>>> Jim
>>>>>> --
>>>>>> J.J. Green,  Seaview Sensing Ltd.,
>>>>>> http://seaviewsensing.com
>>>>>>
>>>>>>
>>>>>> To unsubscribe, send the message "signoff gmt-help" to
>>>>>> [email protected]
>>>>>>
>>>>>
>>>>> To unsubscribe, send the message "signoff gmt-help" to
>>>>> [email protected]
>>>>>
>>>>
>>>> To unsubscribe, send the message "signoff gmt-help" to
>>>> [email protected]
>>>>
>>>
>>> To unsubscribe, send the message "signoff gmt-help" to
>>> [email protected]
>>>
>>
>> To unsubscribe, send the message "signoff gmt-help" to
>> [email protected]
>>
>
> To unsubscribe, send the message "signoff gmt-help" to
> [email protected]
>

To unsubscribe, send the message "signoff gmt-help" to [email protected]