Re: g.extension, svn, and Mac

Nicklas Larsson <[email protected]>
Newsgroups gmane.comp.gis.grass.devel
Message-ID <[email protected]> 
Michael,

You may try without setting SDK at all (remove --with-macosx-sdk= and CONDA_BUILD_SYSROOT), but I doubt it will. CONDA_BUILD_SYSROOT is not a workaround, it’s needed for conda.

(If indeed necessary to set SDK, it might be better to use:
CONDA_BUILD_SYSROOT=$(xcrun --show-sdk-path) to use present SDK while building GRASS, but make sure to set MACOSX_DEPLOYMENT_TARGET.)


What seems to work for compiling extensions, is modifying the file:

/Applications/GRASS-7.9.app/Contents/Resources/include/Make/Platform.make

deleting the 4 instances of the text:

-isysroot /Users/cmbarton/SDKs/MacOSX10.14.sdk

I cannot however tell whether this works without Xcode.

Best,
Nicklas


> On 6 Aug 2020, at 00:48, Michael Barton <[email protected]> wrote:
> 
> This has to do with some kind of change in master (not in v. 7.8.4dev as of 25 July) that caused configure to fail with a bogus missing zlib message. Nicklas found a workaround by adding
> 
> export CONDA_BUILD_SYSROOT=[hard path to SDK]
> 
> to the configure script. But that is now causing problems with compiling through g.extension. So we need to find out why configure is failing. 
> 
> I've filed a bug report at: https://github.com/OSGeo/grass/issues/880 <https://github.com/OSGeo/grass/issues/880> 
> 
> 
> Michael
> ____________________
> C. Michael Barton
> Director, Center for Social Dynamics & Complexity 
> Director, Network for Computational Modeling in Social & Ecological Sciences
> Professor of Anthropology, School of Human Evolution & Social Change
> Head, Graduate Faculty in Complex Adaptive Systems Science
> Arizona State University
> 
> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
> www: 'http://www.public.asu.edu/~cmbarton <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' <https://complexity.asu.edu/csdc'>
> 
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>> On Aug 5, 2020, at 3:16 PM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>> 
>> It's better if the binary does not need any SDK so people can use it without installing Xcode. It really shouldn't be necessary. There should be all the tools needed for compiling within the miniconda package installed in the app. I'm pretty sure I know what line in configure is causing this. Need to see how to get around it. 
>> 
>> Michael
>> ____________________
>> C. Michael Barton
>> Director, Center for Social Dynamics & Complexity 
>> Director, Network for Computational Modeling in Social & Ecological Sciences
>> Professor of Anthropology, School of Human Evolution & Social Change
>> Head, Graduate Faculty in Complex Adaptive Systems Science
>> Arizona State University
>> 
>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>> www: 'http://www.public.asu.edu/~cmbarton <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' <https://complexity.asu.edu/csdc'>
>> 
>> 
>> 
>>> On Aug 5, 2020, at 3:04 PM, Steven Pawley <[email protected] <mailto:[email protected]>> wrote:
>>> 
>>> I’m on 10.15 (on a relatively new Mac) and officially Xcode only ships with the latest SDK. I think unofficially it might be possible to copy older SDKs into the Xcode app bundle but presumably not ideal.
>>> 
>>> 
>>>> On Aug 5, 2020, at 3:46 PM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>>>> 
>>>> This error implies that you need the 10.14.sdk folder. Why would that be so? That would be a problem. 
>>>> 
>>>> Michael
>>>> ____________________
>>>> C. Michael Barton
>>>> Director, Center for Social Dynamics & Complexity 
>>>> Director, Network for Computational Modeling in Social & Ecological Sciences
>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>> Arizona State University
>>>> 
>>>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>>>> www: 'http://www.public.asu.edu/~cmbarton <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=fyXN3VStjHZGCQbsYN2_xQ13D7SMjIs8kHrGU5a2_jY&e=>, https://complexity.asu.edu/csdc' <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=m8TFRpKA72VXur99soNzYcxoGw5_Ss7Q1bEWk22hE6U&e=>
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>>>>> On Aug 5, 2020, at 2:39 PM, Steven Pawley <[email protected] <mailto:[email protected]>> wrote:
>>>>> 
>>>>> Hi Michael,
>>>>> 
>>>>> Thanks for updating. I can still install python-based extensions without any error, however I still get the same error for compiled code:
>>>>> 
>>>>> g.extension extension=r.fill.gaps                                               
>>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)...
>>>>> Compiling...
>>>>> clang-10: warning: no such sysroot directory:
>>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
>>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found
>>>>> #include <math.h>
>>>>>          ^~~~~~~~
>>>>> 1 error generated.
>>>>> make: *** [OBJ.x86_64-apple-darwin19.6.0/cell_funcs.o] Error
>>>>> 1
>>>>> ERROR: Compilation failed, sorry. Please check above error messages.
>>>>> 
>>>>> Steve
>>>>> 
>>>>>> On Aug 5, 2020, at 2:00 PM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>>>>>> 
>>>>>> Steve,
>>>>>> 
>>>>>> I just now posted a new updated GRASS 7.9dev that includes svn in the app. It solved the g.extension problem for me. Can you test and see if it solves it for you too? 
>>>>>> 
>>>>>> Michael
>>>>>> ____________________
>>>>>> C. Michael Barton
>>>>>> Director, Center for Social Dynamics & Complexity 
>>>>>> Director, Network for Computational Modeling in Social & Ecological Sciences
>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>> Arizona State University
>>>>>> 
>>>>>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>>>>>> www: 'http://www.public.asu.edu/~cmbarton <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, https://complexity.asu.edu/csdc' <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=>
>>>>>> 
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>>>>>>> On Aug 4, 2020, at 11:59 AM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>>>>>>> 
>>>>>>> I'm pretty sure this happened when I installed developer tools 11.5 
>>>>>>> 
>>>>>>> I want to make sure that anyone using the binaries can do so without having to separately install any dependencies. So I'll see what happens if I just include svn in the app. I will need to test on a system that suffers from this lack. 
>>>>>>> 
>>>>>>> Michael
>>>>>>> ____________________
>>>>>>> C. Michael Barton
>>>>>>> Director, Center for Social Dynamics & Complexity 
>>>>>>> Director, Network for Computational Modeling in Social & Ecological Sciences
>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>>> Arizona State University
>>>>>>> 
>>>>>>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>>>>>>> www: 'http://www.public.asu.edu/~cmbarton <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, https://complexity.asu.edu/csdc' <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=>
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>>>>>>>> On Aug 4, 2020, at 11:56 AM, Steven Pawley <[email protected] <mailto:[email protected]>> wrote:
>>>>>>>> 
>>>>>>>> Hi Michael,
>>>>>>>> 
>>>>>>>> Right, I do have svn installed via Homebrew (I get  'Type 'svn help' for usage.’), so that probably explains why g.extension works for me overall, apart from the issue with finding the MacOS SDK.
>>>>>>>> 
>>>>>>>> Steve
>>>>>>>> 
>>>>>>>>> On Aug 4, 2020, at 11:27 AM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>>>>>>>>> 
>>>>>>>>> Steven,
>>>>>>>>> 
>>>>>>>>> What happens if you open a terminal window and type 'svn' followed by a return? 
>>>>>>>>> 
>>>>>>>>> Michael
>>>>>>>>> ____________________
>>>>>>>>> C. Michael Barton
>>>>>>>>> Director, Center for Social Dynamics & Complexity 
>>>>>>>>> Director, Network for Computational Modeling in Social & Ecological Sciences
>>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>>>>> Arizona State University
>>>>>>>>> 
>>>>>>>>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>>>>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=6KybHpYJMo7V86xk_1VxAmD-_UolxXaQfLvYShRFgpk&e=>, https://complexity.asu.edu/csdc' <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=abWZQP3dzmM5KTmBUXPwvqbzQUlMgfhQzUGEr0HevTo&e=>
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>>>>>>>>>> On Aug 3, 2020, at 6:53 PM, Steven Pawley <[email protected] <mailto:[email protected]>> wrote:
>>>>>>>>>> 
>>>>>>>>>> Perhaps a different issue,  but I can install extensions, but only pure python-based extensions. Anything that requires compilation of C code fails.
>>>>>>>>>> 
>>>>>>>>>> For example, when using the latest GRASS GIS binary (7.9, 25th July 2020 build), this works with r.texture.tiled:
>>>>>>>>>> 
>>>>>>>>>> Fetching <r.texture.tiled> from GRASS GIS Addons repository (be patient)...
>>>>>>>>>> Compiling...
>>>>>>>>>> Installing...
>>>>>>>>>> Updating extensions metadata file...
>>>>>>>>>> Updating extension modules metadata file...
>>>>>>>>>> Installation of <r.texture.tiled> successfully finished
>>>>>>>>>> 
>>>>>>>>>> But for example, r.fill.gaps does not:
>>>>>>>>>> 
>>>>>>>>>> g.extension extension=r.fill.gaps                                               
>>>>>>>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)...
>>>>>>>>>> Compiling...
>>>>>>>>>> clang-10: warning: no such sysroot directory:
>>>>>>>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
>>>>>>>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found
>>>>>>>>>> #include <math.h>
>>>>>>>>>>          ^~~~~~~~
>>>>>>>>>> 1 error generated.
>>>>>>>>>> make: *** [OBJ.x86_64-apple-darwin19.5.0/cell_funcs.o] Error
>>>>>>>>>> 1
>>>>>>>>>> ERROR: Compilation failed, sorry. Please check above error messages.
>>>>>>>>>> 
>>>>>>>>>> The 7.9-dev build throws an error because it appears to be still looking for components based on your system, specifically.,The 7.8.4 binary (16th July 2020 build) also throws the same error. I’m running the MacOS 10.15.6.
>>>>>>>>>> 
>>>>>>>>>> Steve 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>>> On Aug 2, 2020, at 4:44 PM, Michael Barton <[email protected] <mailto:[email protected]>> wrote:
>>>>>>>>>>> 
>>>>>>>>>>> I just learned yesterday, when I tried to install something from g.extension that:
>>>>>>>>>>> 
>>>>>>>>>>> 1. g.extension uses svn to download packages, and
>>>>>>>>>>> 2. Apple stopped including svn with the current OS (10.15.x) and its developer tools
>>>>>>>>>>> 
>>>>>>>>>>> I don't know if anyone else has run into this yet, but it could be an increasingly sticky issue going forward. Unless there are plans to change how g.extension gets packages, I suppose I need to include it in the Mac app bundle. 
>>>>>>>>>>> 
>>>>>>>>>>> Has anyone else hit this yet?
>>>>>>>>>>> 
>>>>>>>>>>> Michael 
>>>>>>>>>>> ____________________
>>>>>>>>>>> C. Michael Barton
>>>>>>>>>>> Director, Center for Social Dynamics & Complexity 
>>>>>>>>>>> Director, Network for Computational Modeling in Social & Ecological Sciences
>>>>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>>>>>>> Arizona State University
>>>>>>>>>>> 
>>>>>>>>>>> voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>>>>>>> fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
>>>>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=wLo54OaOggTCfa9dMnza-vU7d8tllnb8G9z7MW3tF38&e=>, https://complexity.asu.edu/csdc' <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=-cLS2YOXOnAMIbnQqtJQAbmXsjh9CVUVr2PzI6yj6FE&e=>
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>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> grass-dev mailing list
>>>>>>>>>>> [email protected] <mailto:[email protected]>
>>>>>>>>>>> https://lists.osgeo.org/mailman/listinfo/grass-dev <https://urldefense.proofpoint.com/v2/url?u=https-3A__lists.osgeo.org_mailman_listinfo_grass-2Ddev&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=4UVbmUdiztW2twuvUPIEUWiez0RLGyHRTdL0TV5DVfw&e=>
>>>>>>>>> 
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>

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