Re: i.atcorr with Sentinel2

Moritz Lennert <[email protected]>
Newsgroups gmane.comp.gis.grass.user
Message-ID <[email protected]>
On 18/12/17 13:14, Žofie Cimburová wrote:
> Hi all,
> Now the 6S parameters are complete, but the output map contains only 
> NULLs, no matter what combinations of input parameters and flags I use. 
> Have anyone encountered the same issue? (Info below.)

In the i.atcorr man page it says:

"If flag -r is used, the input raster data are treated as reflectance. 
Otherwise, the input raster data are treated as radiance values"

IIUC, your data is still in DN. You might want to try to transform this 
into radiance values before sending it into i.atcorr.

Moritz

> 
> Thanks again.
> Zofie
> 
> ----------------------------------------
> Version:
> g.version -g
> version=7.4.0RC1
> date=2017
> revision=exported
> build_date=2017-11-18
> build_platform=x86_64-pc-linux-gnu
> build_off_t_size=8
> 
> ----------------------------------------
> Region:
> g.region -p
> projection: 1 (UTM)
> zone:       33
> datum:      etrs89
> ellipsoid:  grs80
> north:      6653695
> south:      6643685
> west:       256495
> east:       266505
> nsres:      10
> ewres:      10
> rows:       1001
> cols:       1001
> cells:      1002001
> 
> ----------------------------------------
> Input data: Sentinel2 L1C product B02 (tried with B01 too)
> r.info <http://r.info> map=test_B02@p_Sentinel4Nature_S2_Oslo
>   +----------------------------------------------------------------------------+
>   | Map:      test_B02@p_Sentinel4Nat  Date: Wed Dec  6 12:06:39 2017
>   | Mapset:   p_Sentinel4Nature_S2_Oslo      Login of Creator: 
> stefan.blumentr
>   | Location: ETRS_33N
>   | DataBase: /data/grass
>   | Title:    
> S2A_OPER_PRD_MSIL1C_PDMC_20160907T044118_R008_V20160905T104022_2
>   | Timestamp: none
>   |----------------------------------------------------------------------------|
>   |
>   |   Type of Map:  raster               Number of Categories: 0
>   |   Data Type:    CELL
>   |   Rows:         1001
>   |   Columns:      1001
>   |   Total Cells:  1002001
>   |        Projection: UTM (zone 33)
>   |            N:    6653695    S:    6643685   Res:    10
>   |            E:     266505    W:     256495   Res:    10
>   |   Range of data:    min = 1  max = 28000
>   |
>   |   Data Description:
>   |    generated by r.in.gdal
>   +----------------------------------------------------------------------------+
> 
> ----------------------------------------
> 6s file:
> 25- geometrical conditions=Sentinel-2A
> 9 5 10.6728 10.73413 59.90647- month day hh.ddd longitude latitude
> 4 - atmospheric model=subarctic summer
> 3- aerosol model=urban
> 50- visibility [km] (aerosol model concentration) (this is estimated, I 
> also tried with AOD specified)
> -0.055- mean target elevation above sea level [km]
> -1000- sensor height
> 166- Sentinel2A Blue band B2 (440nm - 535nm)
> 
> ----------------------------------------
> Command:
> i.atcorr input=test_B02@p_Sentinel4Nature_S2_Oslo range=1,28000 
> elevation=dem_10m_25833@p_Sentinel4Nature_S2_Oslo 
> parameters=/home/NINA.NO/zofie.cimburova/Sentinel4Nature/DATA/6s.txt 
> <http://NINA.NO/zofie.cimburova/Sentinel4Nature/DATA/6s.txt> 
> output=test_B02_atcorr
>  >Atmospheric correction...
>  >Atmospheric correction complete.
> 
> (I am not sure about the range parameter, tried with 0,255 too. The DEM 
> contains no NULLs. Also tried running with -r and -a flags.)
> 
> ----------------------------------------
> Output:
> r.info <http://r.info> map=test_B02_atcorr@p_Sentinel4Nature_S2_Oslo
>   +----------------------------------------------------------------------------+
>   | Map:      test_B02_atcorr@p_Sentinel4N  Date: Mon Dec 18 13:10:14 2017
>   | Mapset:   p_Sentinel4Nature_S2_Oslo      Login of Creator: 
> zofie.cimburova
>   | Location: ETRS_33N
>   | DataBase: /data/grass
>   | Title:    test_B02_atcorr2
>   | Timestamp: none
>   |----------------------------------------------------------------------------|
>   |
>   |   Type of Map:  raster               Number of Categories: 0
>   |   Data Type:    FCELL
>   |   Rows:         1001
>   |   Columns:      1001
>   |   Total Cells:  1002001
>   |        Projection: UTM (zone 33)
>   |            N:    6653695    S:    6643685   Res:    10
>   |            E:     266505    W:     256495   Res:    10
>   |   Range of data:    min = -nan  max = -nan
>   |
>   |   Data Description:
>   |    generated by i.atcorr
>   |
>   |   Comments:
>   |    i.atcorr input="test_B02@p_Sentinel4Nature_S2_Oslo" range=1,28\
>   |    000 elevation="dem_10m_25833@p_Sentinel4Nature_S2_Oslo" para\
>   |    meters="/home/NINA.NO/zofie.cimburova/Sentinel4Nature/DATA/6s.txt 
> <http://NINA.NO/zofie.cimburova/Sentinel4Nature/DATA/6s.txt>" o\
>   |    utput="test_B02_atcorr2" rescale=0,255
>   |
>   +----------------------------------------------------------------------------+
> 
> 
> 
> On Fri, Dec 15, 2017 at 5:12 PM, Žofie Cimburová 
> <[email protected] <mailto:[email protected]>> wrote:
> 
>     Dear Markus,
>     thanks for your reply, this is exactly what I need to know!
> 
>     Best, Zofie
> 
>     On Fri, Dec 15, 2017 at 5:09 PM, Markus Neteler <[email protected]
>     <mailto:[email protected]>> wrote:
> 
> 
>         On Dec 15, 2017 3:54 PM, "Žofie Cimburová"
>         <[email protected] <mailto:[email protected]>> wrote:
>         >
>         > Dear all,
>         > I am trying to use i.atcorr (GRASS 7.4) to apply atmospheric corrections for Sentinel 2 data. The documentation provides a great help, but there are two points I am not sure about - 
>         >
>         > - I don't need the atmospheric correction to be applied to the whole scene, so I only imported a small clip of the scene to GRASS. What longitude and latitude shall I then specify in the 6S parameters?
> 
>         I'd use the center coordinates of the clipped area.
> 
>         > Or is it necessary to apply the corrections to the entire scene?
> 
>         No since it is a pixel based algorithm.
> 
>         > - How can I estimate the value of visibility (aerosol model concentration)? 
> 
>         There are AERONET data online somewhere which might be the best
>         choice.
> 
>         Markus
> 
> 
> 
> 
> 
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