Re: Fwd: Bug installed and compiled Report GNU MCSim (5.5.0)
Arnon Chitsakhon <[email protected]> Sat, 22 Feb 2014 21:41:42 +0700
| Newsgroups | gmane.comp.gnu.mcsim |
|---|---|
| Message-ID | <CAPD2S1FWvpzsOrJjxjnpLTA85JN3LBE5AUKHgO29NZXXnHWvGA@mail.gmail.com> |
--===============7167109783079242923== Content-Type: multipart/alternative; boundary=001a11c33b02a72d0d04f2ffbc3e --001a11c33b02a72d0d04f2ffbc3e Content-Type: text/plain; charset=ISO-8859-1 Hi Elizabeth, Thank you for your reply and advice. Now, I have compiled package and tested it follow the User's manual GNU MCSim (perc.model).I get some error. Before that I have installed any package for compiled it include that your advice. but I get some error when I create model. I used "mod perc.model" command to create model.c. root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# mod perc.model ________________________________________ Mod v5.5.0 - Model Generator for MCSim MCSim and associated software comes with ABSOLUTELY NO WARRANTY; This is free software, and you are welcome to redistribute it under certain conditions; see the GNU General Public License. Using LibSBML. * Created model file 'model.c'. I used "dir" command to find the "model.c" created. The result is follow this. The "model.c" have created. root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# dir Makefile mod.log perc.mtc.in perc.setpoint.dat Makefile.in perc.lsodes.in perc.mtc.out perc.setpoint.in mcsim.log perc.lsodes.out perc.ndoses.in perc.setpoint.out model.c perc.model perc.ndoses.out ref_model.c And Then, I type "makemcsim perc.model" I don't get "mcsim.perc" same as follow User's manual GNU MCSim. but I get "mcsim.perc.model." instead. root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# makemcsim perc.modelCreating model.c file from perc.model ... ________________________________________ Mod v5.5.0 - Model Generator for MCSim MCSim and associated software comes with ABSOLUTELY NO WARRANTY; This is free software, and you are welcome to redistribute it under certain conditions; see the GNU General Public License. Using LibSBML. * Created model file 'model.c'. Compiling model ... Cleaning up ... Created executable mcsim.perc.model. Finally, I type "mcsim.perc.model" to replace "mcsim.perc" in the terminal command. I get follow this. root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# mcsim.perc.model mcsim.perc.model: command not found And so I also type "mcsim.perc" I get it same. I don't know how to fix this problem. Could you comment or suggest me about that? Thanks a lot for follow my E-mail and advise me about MCSim. I'm interested in and I select it for my work. Best regard, Arnon On Sat, Feb 22, 2014 at 5:46 PM, <[email protected]> wrote: > Hi, > > You need to install some other libraries/packages to compile & build > xmcsim. Specifically, " > you need XWindows, Tcl/Tk and wish" per the documentation[1]. Gnuplot & > makeinfo appear to be good packages for mcsim so you may want to add those > too. > > This appears to be a simple compilation issue hence the reason I chirped > in. I haven't used mcsim in a few years but still monitor the email lists. > > Good luck! > Elizabeth > Bangkok > > [1] > http://toxi.ineris.fr/activites/toxicologie_quantitative/mcsim/mcsim_distrib/manmcsim_8.php > *From:* Arnon Chitsakhon <[email protected]> > *Sent:* Saturday, February 22, 2014 11:49 AM > *To:* [email protected] > > ---------- Forwarded message ---------- > From: "Arnon Chitsakhon" <[email protected]> > Date: Feb 22, 2014 11:23 AM > Subject: Bug installed and compiled Report GNU MCSim (5.5.0) > To: <[email protected]> > Cc: "Manupat Lohitnavy" <[email protected]>, "Brad Reisfeld" < > [email protected]>, "Kitza Kritsada" <[email protected]> > > Dear Sir, > > My name is Arnon. I'm a student from Naresuan University in Thailand. I'm > doing my work about PKPB modeling. I'm interested in your GNU MCSim program > for my work. > > I have attempted to install GNU MCSim (5.5.0) on Ubuntu version 12.10 but > I found a few bugs when I installed and compiled. > > I have used the command prompt follow this email install package. > ($ represents the Ubuntu command prompt.) > > I must to very apologize you for the very long E-mail to you first. > I hope that you help me about fix this problem . > > > The First, I have used "./configure" command and result is follow. > > > -------------------------------------------------------------------------------------------- > arc@arc-System-Product-Name:~/Documents/mcsim-5.5.0$ ./configure > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for gawk... no > checking for mawk... mawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking for style of include used by make... GNU > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking dependency style of gcc... gcc3 > checking for ar... ar > checking the archiver (ar) interface... ar > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking how to print strings... printf > checking for a sed that does not truncate output... /bin/sed > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for fgrep... /bin/grep -F > checking for ld used by gcc... /usr/bin/ld > checking if the linker (/usr/bin/ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 1572864 > checking whether the shell understands some XSI constructs... yes > checking whether the shell understands "+="... yes > checking how to convert x86_64-unknown-linux-gnu file names to > x86_64-unknown-linux-gnu format... func_convert_file_noop > checking how to convert x86_64-unknown-linux-gnu file names to toolchain > format... func_convert_file_noop > checking for /usr/bin/ld option to reload object files... -r > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for mt... mt > checking if mt is a manifest tool... no > checking how to run the C preprocessor... gcc -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports > shared libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking for gcc... (cached) gcc > checking whether we are using the GNU C compiler... (cached) yes > checking whether gcc accepts -g... (cached) yes > checking for gcc option to accept ISO C89... (cached) none needed > checking dependency style of gcc... (cached) gcc3 > checking for wish... no > checking for gnuplot... no > checking for info... yes > checking for install-info... yes > checking for makeinfo... no > checking for main in -lgslcblas... yes > checking for main in -lgsl... yes > checking for main in -lm... yes > checking for main in -lsbml... no > checking for ANSI C header files... (cached) yes > checking float.h usability... yes > checking float.h presence... yes > checking for float.h... yes > checking limits.h usability... yes > checking limits.h presence... yes > checking for limits.h... yes > checking for an ANSI C-conforming const... yes > checking whether struct tm is in sys/time.h or time.h... time.h > checking for stdlib.h... (cached) yes > checking for GNU libc compatible malloc... yes > checking for stdlib.h... (cached) yes > checking for GNU libc compatible realloc... yes > checking for floor... yes > checking for modf... yes > checking for pow... yes > checking for sqrt... yes > checking for strchr... yes > checking that generated files are newer than configure... done > configure: creating ./config.status > config.status: creating Makefile > config.status: creating mod/Makefile > config.status: creating sim/Makefile > config.status: creating sim/makemcsim > config.status: creating sim/makemcsimd > config.status: creating sim/makemcsims > config.status: creating samples/perc/Makefile > config.status: creating doc/Makefile > config.status: creating config.h > config.status: executing depfiles commands > config.status: executing libtool commands > > > > > > Second, I have used "make" command and result is follow. > So, when this step I found the Error. > > > ------------------------------------------------------------------------------------- > arc@arc-System-Product-Name:~/Documents/mcsim-5.5.0$ make > make all-recursive > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0' > Making all in mod > make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/mod' > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT getopt.o -MD -MP -MF > .deps/getopt.Tpo -c -o getopt.o getopt.c > mv -f .deps/getopt.Tpo .deps/getopt.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lex.o -MD -MP -MF > .deps/lex.Tpo -c -o lex.o lex.c > mv -f .deps/lex.Tpo .deps/lex.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexerr.o -MD -MP -MF > .deps/lexerr.Tpo -c -o lexerr.o lexerr.c > mv -f .deps/lexerr.Tpo .deps/lexerr.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexfn.o -MD -MP -MF > .deps/lexfn.Tpo -c -o lexfn.o lexfn.c > mv -f .deps/lexfn.Tpo .deps/lexfn.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mod.o -MD -MP -MF > .deps/mod.Tpo -c -o mod.o mod.c > mod.c: In function 'PromptFilenames': > mod.c:108:9: warning: ignoring return value of 'fgets', declared with > attribute warn_unused_result [-Wunused-result] > mod.c:117:11: warning: ignoring return value of 'fgets', declared with > attribute warn_unused_result [-Wunused-result] > mv -f .deps/mod.Tpo .deps/mod.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT modd.o -MD -MP -MF > .deps/modd.Tpo -c -o modd.o modd.c > mv -f .deps/modd.Tpo .deps/modd.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT modi.o -MD -MP -MF > .deps/modi.Tpo -c -o modi.o modi.c > mv -f .deps/modi.Tpo .deps/modi.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT modiSBML.o -MD -MP -MF > .deps/modiSBML.Tpo -c -o modiSBML.o modiSBML.c > modiSBML.c: In function 'CountLines': > modiSBML.c:276:10: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > modiSBML.c:282:12: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > mv -f .deps/modiSBML.Tpo .deps/modiSBML.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT modiSBML2.o -MD -MP -MF > .deps/modiSBML2.Tpo -c -o modiSBML2.o modiSBML2.c > mv -f .deps/modiSBML2.Tpo .deps/modiSBML2.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT modo.o -MD -MP -MF > .deps/modo.Tpo -c -o modo.o modo.c > mv -f .deps/modo.Tpo .deps/modo.Po > gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strutil.o -MD -MP -MF > .deps/strutil.Tpo -c -o strutil.o strutil.c > mv -f .deps/strutil.Tpo .deps/strutil.Po > /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o mod getopt.o > lex.o lexerr.o lexfn.o mod.o modd.o modi.o modiSBML.o modiSBML2.o modo.o > strutil.o -lm -lgsl -lgslcblas > libtool: link: gcc -g -O2 -o mod getopt.o lex.o lexerr.o lexfn.o mod.o > modd.o modi.o modiSBML.o modiSBML2.o modo.o strutil.o -lm -lgsl -lgslcblas > make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod' > Making all in sim > make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim' > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -ffloat-store -g -O2 -MT libmodelu_la-modelu.lo -MD -MP -MF > .deps/libmodelu_la-modelu.Tpo -c -o libmodelu_la-modelu.lo `test -f > 'modelu.c' || echo './'`modelu.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -ffloat-store -g -O2 -MT > libmodelu_la-modelu.lo -MD -MP -MF .deps/libmodelu_la-modelu.Tpo -c > modelu.c -fPIC -DPIC -o .libs/libmodelu_la-modelu.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -ffloat-store -g -O2 -MT > libmodelu_la-modelu.lo -MD -MP -MF .deps/libmodelu_la-modelu.Tpo -c > modelu.c -o libmodelu_la-modelu.o >/dev/null 2>&1 > mv -f .deps/libmodelu_la-modelu.Tpo .deps/libmodelu_la-modelu.Plo > /bin/bash ../libtool --tag=CC --mode=link gcc -ffloat-store -g -O2 -o > libmodelu.la -rpath /usr/local/lib libmodelu_la-modelu.lo -lm -lgsl > -lgslcblas > libtool: link: gcc -shared -fPIC -DPIC .libs/libmodelu_la-modelu.o -lm > -lgsl -lgslcblas -O2 -Wl,-soname -Wl,libmodelu.so.0 -o > .libs/libmodelu.so.0.0.0 > libtool: link: (cd ".libs" && rm -f "libmodelu.so.0" && ln -s > "libmodelu.so.0.0.0" "libmodelu.so.0") > libtool: link: (cd ".libs" && rm -f "libmodelu.so" && ln -s > "libmodelu.so.0.0.0" "libmodelu.so") > libtool: link: ar cru .libs/libmodelu.a libmodelu_la-modelu.o > libtool: link: ranlib .libs/libmodelu.a > libtool: link: ( cd ".libs" && rm -f "libmodelu.la" && ln -s "../ > libmodelu.la" "libmodelu.la" ) > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo > getopt.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT getopt.lo -MD > -MP -MF .deps/getopt.Tpo -c getopt.c -fPIC -DPIC -o .libs/getopt.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT getopt.lo -MD > -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&1 > mv -f .deps/getopt.Tpo .deps/getopt.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT lex.lo -MD -MP -MF .deps/lex.Tpo -c -o lex.lo lex.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lex.lo -MD -MP > -MF .deps/lex.Tpo -c lex.c -fPIC -DPIC -o .libs/lex.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lex.lo -MD -MP > -MF .deps/lex.Tpo -c lex.c -o lex.o >/dev/null 2>&1 > mv -f .deps/lex.Tpo .deps/lex.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT lexerr.lo -MD -MP -MF .deps/lexerr.Tpo -c -o lexerr.lo > lexerr.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexerr.lo -MD > -MP -MF .deps/lexerr.Tpo -c lexerr.c -fPIC -DPIC -o .libs/lexerr.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexerr.lo -MD > -MP -MF .deps/lexerr.Tpo -c lexerr.c -o lexerr.o >/dev/null 2>&1 > mv -f .deps/lexerr.Tpo .deps/lexerr.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT lexfn.lo -MD -MP -MF .deps/lexfn.Tpo -c -o lexfn.lo > lexfn.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexfn.lo -MD > -MP -MF .deps/lexfn.Tpo -c lexfn.c -fPIC -DPIC -o .libs/lexfn.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexfn.lo -MD > -MP -MF .deps/lexfn.Tpo -c lexfn.c -o lexfn.o >/dev/null 2>&1 > mv -f .deps/lexfn.Tpo .deps/lexfn.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT list.lo -MD -MP -MF .deps/list.Tpo -c -o list.lo list.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT list.lo -MD -MP > -MF .deps/list.Tpo -c list.c -fPIC -DPIC -o .libs/list.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT list.lo -MD -MP > -MF .deps/list.Tpo -c list.c -o list.o >/dev/null 2>&1 > mv -f .deps/list.Tpo .deps/list.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT lsodes1.lo -MD -MP -MF .deps/lsodes1.Tpo -c -o > lsodes1.lo lsodes1.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes1.lo -MD > -MP -MF .deps/lsodes1.Tpo -c lsodes1.c -fPIC -DPIC -o .libs/lsodes1.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes1.lo -MD > -MP -MF .deps/lsodes1.Tpo -c lsodes1.c -o lsodes1.o >/dev/null 2>&1 > mv -f .deps/lsodes1.Tpo .deps/lsodes1.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT lsodes2.lo -MD -MP -MF .deps/lsodes2.Tpo -c -o > lsodes2.lo lsodes2.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes2.lo -MD > -MP -MF .deps/lsodes2.Tpo -c lsodes2.c -fPIC -DPIC -o .libs/lsodes2.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes2.lo -MD > -MP -MF .deps/lsodes2.Tpo -c lsodes2.c -o lsodes2.o >/dev/null 2>&1 > mv -f .deps/lsodes2.Tpo .deps/lsodes2.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT matutil.lo -MD -MP -MF .deps/matutil.Tpo -c -o > matutil.lo matutil.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutil.lo -MD > -MP -MF .deps/matutil.Tpo -c matutil.c -fPIC -DPIC -o .libs/matutil.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutil.lo -MD > -MP -MF .deps/matutil.Tpo -c matutil.c -o matutil.o >/dev/null 2>&1 > mv -f .deps/matutil.Tpo .deps/matutil.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT matutilo.lo -MD -MP -MF .deps/matutilo.Tpo -c -o > matutilo.lo matutilo.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutilo.lo -MD > -MP -MF .deps/matutilo.Tpo -c matutilo.c -fPIC -DPIC -o .libs/matutilo.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutilo.lo -MD > -MP -MF .deps/matutilo.Tpo -c matutilo.c -o matutilo.o >/dev/null 2>&1 > mv -f .deps/matutilo.Tpo .deps/matutilo.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT mh.lo -MD -MP -MF .deps/mh.Tpo -c -o mh.lo mh.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mh.lo -MD -MP > -MF .deps/mh.Tpo -c mh.c -fPIC -DPIC -o .libs/mh.o > mh.c: In function 'ReadRestart2': > mh.c:1788:10: warning: ignoring return value of 'fscanf', declared with > attribute warn_unused_result [-Wunused-result] > mh.c:1821:12: warning: ignoring return value of 'fscanf', declared with > attribute warn_unused_result [-Wunused-result] > mh.c: In function 'ReadRestart': > mh.c:1721:10: warning: ignoring return value of 'fscanf', declared with > attribute warn_unused_result [-Wunused-result] > mh.c:1743:12: warning: ignoring return value of 'fscanf', declared with > attribute warn_unused_result [-Wunused-result] > mh.c: In function 'DoMarkov': > mh.c:534:12: warning: ignoring return value of 'fscanf', declared with > attribute warn_unused_result [-Wunused-result] > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mh.lo -MD -MP > -MF .deps/mh.Tpo -c mh.c -o mh.o >/dev/null 2>&1 > mv -f .deps/mh.Tpo .deps/mh.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT optdsign.lo -MD -MP -MF .deps/optdsign.Tpo -c -o > optdsign.lo optdsign.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT optdsign.lo -MD > -MP -MF .deps/optdsign.Tpo -c optdsign.c -fPIC -DPIC -o .libs/optdsign.o > optdsign.c: In function 'ReadAndSimulate': > optdsign.c:384:10: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > optdsign.c:395:14: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > optdsign.c:401:12: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT optdsign.lo -MD > -MP -MF .deps/optdsign.Tpo -c optdsign.c -o optdsign.o >/dev/null 2>&1 > mv -f .deps/optdsign.Tpo .deps/optdsign.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT random.lo -MD -MP -MF .deps/random.Tpo -c -o random.lo > random.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT random.lo -MD > -MP -MF .deps/random.Tpo -c random.c -fPIC -DPIC -o .libs/random.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT random.lo -MD > -MP -MF .deps/random.Tpo -c random.c -o random.o >/dev/null 2>&1 > mv -f .deps/random.Tpo .deps/random.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT sim.lo -MD -MP -MF .deps/sim.Tpo -c -o sim.lo sim.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT sim.lo -MD -MP > -MF .deps/sim.Tpo -c sim.c -fPIC -DPIC -o .libs/sim.o > sim.c: In function 'PromptFilenames': > sim.c:648:9: warning: ignoring return value of 'fgets', declared with > attribute warn_unused_result [-Wunused-result] > sim.c:660:11: warning: ignoring return value of 'fgets', declared with > attribute warn_unused_result [-Wunused-result] > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT sim.lo -MD -MP > -MF .deps/sim.Tpo -c sim.c -o sim.o >/dev/null 2>&1 > mv -f .deps/sim.Tpo .deps/sim.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT simi.lo -MD -MP -MF .deps/simi.Tpo -c -o simi.lo simi.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simi.lo -MD -MP > -MF .deps/simi.Tpo -c simi.c -fPIC -DPIC -o .libs/simi.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simi.lo -MD -MP > -MF .deps/simi.Tpo -c simi.c -o simi.o >/dev/null 2>&1 > mv -f .deps/simi.Tpo .deps/simi.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT siminit.lo -MD -MP -MF .deps/siminit.Tpo -c -o > siminit.lo siminit.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT siminit.lo -MD > -MP -MF .deps/siminit.Tpo -c siminit.c -fPIC -DPIC -o .libs/siminit.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT siminit.lo -MD > -MP -MF .deps/siminit.Tpo -c siminit.c -o siminit.o >/dev/null 2>&1 > mv -f .deps/siminit.Tpo .deps/siminit.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT simmonte.lo -MD -MP -MF .deps/simmonte.Tpo -c -o > simmonte.lo simmonte.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simmonte.lo -MD > -MP -MF .deps/simmonte.Tpo -c simmonte.c -fPIC -DPIC -o .libs/simmonte.o > simmonte.c: In function 'ReadSetPoints': > simmonte.c:302:9: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > simmonte.c:329:10: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > simmonte.c: In function 'InitSetPoints': > simmonte.c:275:10: warning: ignoring return value of 'fscanf', declared > with attribute warn_unused_result [-Wunused-result] > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simmonte.lo -MD > -MP -MF .deps/simmonte.Tpo -c simmonte.c -o simmonte.o >/dev/null 2>&1 > mv -f .deps/simmonte.Tpo .deps/simmonte.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT simo.lo -MD -MP -MF .deps/simo.Tpo -c -o simo.lo simo.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simo.lo -MD -MP > -MF .deps/simo.Tpo -c simo.c -fPIC -DPIC -o .libs/simo.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simo.lo -MD -MP > -MF .deps/simo.Tpo -c simo.c -o simo.o >/dev/null 2>&1 > mv -f .deps/simo.Tpo .deps/simo.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT strutil.lo -MD -MP -MF .deps/strutil.Tpo -c -o > strutil.lo strutil.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strutil.lo -MD > -MP -MF .deps/strutil.Tpo -c strutil.c -fPIC -DPIC -o .libs/strutil.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strutil.lo -MD > -MP -MF .deps/strutil.Tpo -c strutil.c -o strutil.o >/dev/null 2>&1 > mv -f .deps/strutil.Tpo .deps/strutil.Plo > /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. > -I.. -g -O2 -MT yourcode.lo -MD -MP -MF .deps/yourcode.Tpo -c -o > yourcode.lo yourcode.c > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT yourcode.lo -MD > -MP -MF .deps/yourcode.Tpo -c yourcode.c -fPIC -DPIC -o .libs/yourcode.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT yourcode.lo -MD > -MP -MF .deps/yourcode.Tpo -c yourcode.c -o yourcode.o >/dev/null 2>&1 > mv -f .deps/yourcode.Tpo .deps/yourcode.Plo > /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o libmcsim.la-rpath /usr/local/lib getopt.lo lex.lo lexerr.lo lexfn.lo list.lo > lsodes1.lo lsodes2.lo matutil.lo matutilo.lo mh.lo optdsign.lo random.lo > sim.lo simi.lo siminit.lo simmonte.lo simo.lo strutil.lo yourcode.lo > libmodelu.la -lm -lgsl -lgslcblas > libtool: link: gcc -shared -fPIC -DPIC .libs/getopt.o .libs/lex.o > .libs/lexerr.o .libs/lexfn.o .libs/list.o .libs/lsodes1.o .libs/lsodes2.o > .libs/matutil.o .libs/matutilo.o .libs/mh.o .libs/optdsign.o .libs/random.o > .libs/sim.o .libs/simi.o .libs/siminit.o .libs/simmonte.o .libs/simo.o > .libs/strutil.o .libs/yourcode.o -Wl,-rpath > -Wl,/home/arc/Documents/mcsim-5.5.0/sim/.libs ./.libs/libmodelu.so -lm > -lgsl -lgslcblas -O2 -Wl,-soname -Wl,libmcsim.so.0 -o > .libs/libmcsim.so.0.0.0 > libtool: link: (cd ".libs" && rm -f "libmcsim.so.0" && ln -s > "libmcsim.so.0.0.0" "libmcsim.so.0") > libtool: link: (cd ".libs" && rm -f "libmcsim.so" && ln -s > "libmcsim.so.0.0.0" "libmcsim.so") > libtool: link: ar cru .libs/libmcsim.a getopt.o lex.o lexerr.o lexfn.o > list.o lsodes1.o lsodes2.o matutil.o matutilo.o mh.o optdsign.o random.o > sim.o simi.o siminit.o simmonte.o simo.o strutil.o yourcode.o > libtool: link: ranlib .libs/libmcsim.a > libtool: link: ( cd ".libs" && rm -f "libmcsim.la" && ln -s "../ > libmcsim.la" "libmcsim.la" ) > make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim' > Making all in doc > make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/doc' > TEXINPUTS=".:$TEXINPUTS" \ > MAKEINFO='/bin/bash /home/arc/Documents/mcsim-5.5.0/missing makeinfo > -I .' \ > texi2dvi --build-dir=mcsim.t2d -o mcsim.dvi \ > mcsim.texinfo > /bin/bash: texi2dvi: command not found > make[2]: *** [mcsim.dvi] Error 127 > make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/doc' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0' > make: *** [all] Error 2 > > > > > > Third, I have uesd "make check" command and result is follow. > So, I got error again. > > > --------------------------------------------------------------------------------------------------- > arc@arc-System-Product-Name:~/Documents/mcsim-5.5.0$ make check > Making check in mod > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/mod' > make[1]: Nothing to be done for `check'. > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod' > Making check in sim > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim' > make[1]: Nothing to be done for `check'. > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim' > Making check in doc > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/doc' > TEXINPUTS=".:$TEXINPUTS" \ > MAKEINFO='/bin/bash /home/arc/Documents/mcsim-5.5.0/missing makeinfo > -I .' \ > texi2dvi --build-dir=mcsim.t2d -o mcsim.dvi \ > mcsim.texinfo > /bin/bash: texi2dvi: command not found > make[1]: *** [mcsim.dvi] Error 127 > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/doc' > make: *** [check-recursive] Error 1 > > > > > > Then I have used "make install" command I got error. > > > ---------------------------------------------------------------------------------------------------- > arc@arc-System-Product-Name:~/Documents/mcsim-5.5.0$ sudo su > [sudo] password for arc: > root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0# make install > Making install in mod > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/mod' > make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/mod' > /bin/mkdir -p '/usr/local/bin' > /bin/bash ../libtool --mode=install /usr/bin/install -c mod > '/usr/local/bin' > libtool: install: /usr/bin/install -c mod /usr/local/bin/mod > /bin/mkdir -p '/usr/local/share/mcsim/mod' > /usr/bin/install -c -m 644 getopt.c getopt.h hungtype.h lex.c lex.h > lexerr.c lexerr.h lexfn.c lexfn.h mod.c mod.h modd.c modd.h modi.c modi.h > modiface.h modiSBML.c modiSBML2.c modiSBML.h modo.c modo.h strutil.c > strutil.h '/usr/local/share/mcsim/mod' > make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod' > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod' > Making install in sim > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim' > make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim' > /bin/mkdir -p '/usr/local/bin' > /usr/bin/install -c makemcsim makemcsims makemcsimd '/usr/local/bin' > /bin/mkdir -p '/usr/local/lib' > /bin/bash ../libtool --mode=install /usr/bin/install -c libmodelu.la > libmcsim.la '/usr/local/lib' > libtool: install: /usr/bin/install -c .libs/libmodelu.so.0.0.0 > /usr/local/lib/libmodelu.so.0.0.0 > libtool: install: (cd /usr/local/lib && { ln -s -f libmodelu.so.0.0.0 > libmodelu.so.0 || { rm -f libmodelu.so.0 && ln -s libmodelu.so.0.0.0 > libmodelu.so.0; }; }) > libtool: install: (cd /usr/local/lib && { ln -s -f libmodelu.so.0.0.0 > libmodelu.so || { rm -f libmodelu.so && ln -s libmodelu.so.0.0.0 > libmodelu.so; }; }) > libtool: install: /usr/bin/install -c .libs/libmodelu.lai /usr/local/lib/ > libmodelu.la > libtool: install: warning: relinking `libmcsim.la' > libtool: install: (cd /home/arc/Documents/mcsim-5.5.0/sim; /bin/bash > /home/arc/Documents/mcsim-5.5.0/libtool --tag CC --mode=relink gcc -g -O2 > -o libmcsim.la -rpath /usr/local/lib getopt.lo lex.lo lexerr.lo lexfn.lo > list.lo lsodes1.lo lsodes2.lo matutil.lo matutilo.lo mh.lo optdsign.lo > random.lo sim.lo simi.lo siminit.lo simmonte.lo simo.lo strutil.lo > yourcode.lo libmodelu.la -lm -lgsl -lgslcblas ) > libtool: relink: gcc -shared -fPIC -DPIC .libs/getopt.o .libs/lex.o > .libs/lexerr.o .libs/lexfn.o .libs/list.o .libs/lsodes1.o .libs/lsodes2.o > .libs/matutil.o .libs/matutilo.o .libs/mh.o .libs/optdsign.o .libs/random.o > .libs/sim.o .libs/simi.o .libs/siminit.o .libs/simmonte.o .libs/simo.o > .libs/strutil.o .libs/yourcode.o -L/usr/local/lib -lmodelu -lm -lgsl > -lgslcblas -O2 -Wl,-soname -Wl,libmcsim.so.0 -o .libs/libmcsim.so.0.0.0 > libtool: install: /usr/bin/install -c .libs/libmcsim.so.0.0.0T > /usr/local/lib/libmcsim.so.0.0.0 > libtool: install: (cd /usr/local/lib && { ln -s -f libmcsim.so.0.0.0 > libmcsim.so.0 || { rm -f libmcsim.so.0 && ln -s libmcsim.so.0.0.0 > libmcsim.so.0; }; }) > libtool: install: (cd /usr/local/lib && { ln -s -f libmcsim.so.0.0.0 > libmcsim.so || { rm -f libmcsim.so && ln -s libmcsim.so.0.0.0 libmcsim.so; > }; }) > libtool: install: /usr/bin/install -c .libs/libmcsim.lai /usr/local/lib/ > libmcsim.la > libtool: install: /usr/bin/install -c .libs/libmodelu.a > /usr/local/lib/libmodelu.a > libtool: install: chmod 644 /usr/local/lib/libmodelu.a > libtool: install: ranlib /usr/local/lib/libmodelu.a > libtool: install: /usr/bin/install -c .libs/libmcsim.a > /usr/local/lib/libmcsim.a > libtool: install: chmod 644 /usr/local/lib/libmcsim.a > libtool: install: ranlib /usr/local/lib/libmcsim.a > libtool: finish: > PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/sbin" > ldconfig -n /usr/local/lib > ---------------------------------------------------------------------- > Libraries have been installed in: > /usr/local/lib > > If you ever happen to want to link against installed libraries > in a given directory, LIBDIR, you must either use libtool, and > specify the full pathname of the library, or use the `-LLIBDIR' > flag during linking and do at least one of the following: > - add LIBDIR to the `LD_LIBRARY_PATH' environment variable > during execution > - add LIBDIR to the `LD_RUN_PATH' environment variable > during linking > - use the `-Wl,-rpath -Wl,LIBDIR' linker flag > - have your system administrator add LIBDIR to `/etc/ld.so.conf' > > See any operating system documentation about shared libraries for > more information, such as the ld(1) and ld.so(8) manual pages. > ---------------------------------------------------------------------- > /bin/mkdir -p '/usr/local/include' > /usr/bin/install -c -m 644 matutil.h list.h lex.h sim.h lexfn.h > hungtype.h modiface.h modelu.h random.h yourcode.h '/usr/local/include' > /bin/mkdir -p '/usr/local/share/mcsim/sim' > /usr/bin/install -c -m 644 getopt.c getopt.h hungtype.h lex.c lex.h > lexerr.c lexerr.h lexfn.c lexfn.h list.c list.h lsodes.h lsodes1.c > lsodes2.c matutil.c matutil.h matutilo.c matutilo.h mh.c mh.h modiface.h > optdsign.c optdsign.h random.c random.h sim.c sim.h simi.c simi.h siminit.c > siminit.h simmonte.c simmonte.h simo.c simo.h strutil.c strutil.h > yourcode.c yourcode.h modelu.c '/usr/local/share/mcsim/sim' > /usr/bin/install -c -m 644 modelu.h '/usr/local/share/mcsim/sim' > make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim' > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim' > Making install in doc > make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/doc' > TEXINPUTS=".:$TEXINPUTS" \ > MAKEINFO='/bin/bash /home/arc/Documents/mcsim-5.5.0/missing makeinfo > -I .' \ > texi2dvi --build-dir=mcsim.t2d -o mcsim.dvi \ > mcsim.texinfo > /bin/bash: texi2dvi: command not found > make[1]: *** [mcsim.dvi] Error 127 > make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/doc' > make: *** [install-recursive] Error 1 > > > > After that I go to the "usr/local/bin" directory I didn't find "xmcsim" in > that path. > and the "usr/local/share" directory I didn't find "xmcsim" too. > > then, I go to the "mcsim/samples/perc" directory I started to type "mod > perc.model" I got follow this. > > > ---------------------------------------------------------------------------------------------------- > root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# > mod perc.model > > ________________________________________ > > Mod v5.5.0 - Model Generator for MCSim > > MCSim and associated software comes with ABSOLUTELY NO WARRANTY; > This is free software, and you are welcome to redistribute it > under certain conditions; see the GNU General Public License. > > > * Created C model file 'model.c'. > > > > > After that, I have used "makemcsim perc.model" but mcsim.perc wasn't > created. and I got follow this. > > > -------------------------------------------------------------------------------------------------- > root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# > makemcsim perc.model > Creating model.c file from perc.model ... > > ________________________________________ > > Mod v5.5.0 - Model Generator for MCSim > > MCSim and associated software comes with ABSOLUTELY NO WARRANTY; > This is free software, and you are welcome to redistribute it > under certain conditions; see the GNU General Public License. > > > * Created C model file 'model.c'. > > > Compiling model ... > model.c:75:15: fatal error: R.h: No such file or directory > compilation terminated. > root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# > > > > > Cloud you help me please ? > > Thank you so much. > > Arnon > --001a11c33b02a72d0d04f2ffbc3e Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr"><div><div>Hi Elizabeth,<br><br></div>Thank you for your re= ply and advice. Now, I have compiled package and tested it follow the User&= #39;s manual GNU MCSim (perc.model).I get some error. Before that I have in= stalled any package for compiled it include that your advice. but I get som= e error when I create model. <br> <br>I used "mod perc.model" command to create model.c. <br><br>ro= ot@arc-System-Product-Name:/usr/share/mcsim/samples/perc# mod perc.model<br= ><br>________________________________________<br><br>Mod v5.5.0 - Model Gen= erator for MCSim<br> <br>MCSim and associated software comes with ABSOLUTELY NO WARRANTY;<br>Thi= s is free software, and you are welcome to redistribute it<br>under certain= conditions; see the GNU General Public License.<br><br>Using LibSBML.<br> <br><br>* Created model file 'model.c'.<br><br><br>I used "dir= " command to find the "model.c" created. The result is follo= w this.<br>The "model.c" have created.<br><br>root@arc-System-Pro= duct-Name:/usr/share/mcsim/samples/perc# dir<br> Makefile mod.log &nbs= p; <a href=3D"http://perc.mtc.in">perc.mtc.in</a> &n= bsp; perc.setpoint.dat<br>Makefile.in <a href=3D"http://p= erc.lsodes.in">perc.lsodes.in</a> perc.mtc.out  = ; <a href=3D"http://perc.setpoint.in">perc.setpoint.in</a><br> mcsim.log perc.lsodes.out <a href=3D"http://perc.nd= oses.in">perc.ndoses.in</a> perc.setpoint.out<br>model.c &= nbsp; perc.model perc= .ndoses.out ref_model.c<br><br></div><div><br></div><div>And Then, I = type "makemcsim perc.model" I don't get "mcsim.perc"= ; same as follow User's manual GNU MCSim. but I get "mcsim.perc.mo= del." instead.<br> <br>root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# makemcsim p= erc.modelCreating model.c file from perc.model ...<br><br>_________________= _______________________<br><br>Mod v5.5.0 - Model Generator for MCSim<br> <br>MCSim and associated software comes with ABSOLUTELY NO WARRANTY;<br>Thi= s is free software, and you are welcome to redistribute it<br>under certain= conditions; see the GNU General Public License.<br><br>Using LibSBML.<br> <br><br>* Created model file 'model.c'.<br><br><br>Compiling model = ...<br>Cleaning up ...<br>Created executable mcsim.perc.model.<br><br></div= ><div><br><div><div><div><div class=3D"gmail_extra">Finally, I type "m= csim.perc.model" to replace "mcsim.perc" in the terminal com= mand. I get follow this.<br> <br>root@arc-System-Product-Name:/usr/share/mcsim/samples/perc# mcsim.perc.= model<br>mcsim.perc.model: command not found<br><br></div><div class=3D"gma= il_extra">And so I also type "mcsim.perc" I get it same.<br><br> I don't know how to fix this problem. Could you comment or suggest me a= bout that? <br><br></div><div class=3D"gmail_extra">Thanks a lot for follow= my E-mail and advise me about MCSim.<br></div><div class=3D"gmail_extra">I= 'm interested in and I select it for my work.<br> </div><div class=3D"gmail_extra"><br><br></div><div class=3D"gmail_extra">B= est regard,<br></div><div class=3D"gmail_extra">Arnon <br></div><div class= =3D"gmail_extra"><br><div class=3D"gmail_quote">On Sat, Feb 22, 2014 at 5:4= 6 PM, <span dir=3D"ltr"><<a href=3D"mailto:[email protected]" ta= rget=3D"_blank">[email protected]</a>></span> wrote:<br> <blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px 0.8ex;border-= left:1px solid rgb(204,204,204);padding-left:1ex"> <div dir=3D"ltr"> <div dir=3D"ltr" style=3D"font-family:'Calibri','Kartika',&= #39;Shonar Bangla','Utsaah','Leelawadee UI','Segoe = UI','Meiryo';font-size:12pt"><div>Hi,</div><div><br></div><div> You need to install some other libraries/packages to compile & build xm= csim. Specifically, “<br></div><div>you need <code>XWindows</cod= e>, <code>Tcl/Tk</code> and <code>wish” <font face=3D"Calibri"></font= ><font face=3D"Kartika"></font>per the documentation[1].<font style=3D"font= -size:12pt"></font></code> Gnuplot & makeinfo appear to be good package= s for mcsim so you may want to add those too.</div> <div><br></div><div>This appears to be a simple compilation issue hence the= reason I chirped in. I haven't used mcsim in a few years but still mon= itor the email lists.</div><div><br></div><div>Good luck!</div><div>Elizabe= th</div> <div>Bangkok</div><div><br></div><div>[1] <a href=3D"http://toxi.ineris.fr/= activites/toxicologie_quantitative/mcsim/mcsim_distrib/manmcsim_8.php" targ= et=3D"_blank">http://toxi.ineris.fr/activites/toxicologie_quantitative/mcsi= m/mcsim_distrib/manmcsim_8.php</a><br> </div><div style=3D"padding-top:5px;border-top:1px solid rgb(229,229,229)">= <div><font style=3D"line-height:15pt;letter-spacing:0.02em;font-family:&quo= t;Calibri","Kartika","Shonar Bangla","Utsaah&= quot;,"Leelawadee UI","Segoe UI","Meiryo";fon= t-size:12pt" face=3D" 'Calibri', 'Kartika', 'Shonar Ban= gla', 'Utsaah', 'Leelawadee UI', 'Segoe UI', &#= 39;Meiryo'"><b>From:</b> <a href=3D"mailto:[email protected]" ta= rget=3D"_blank">Arnon Chitsakhon</a><br> <b>Sent:</b> Saturday, February 22, 2014 11:49 AM<br><b>To:</b> <= a href=3D"mailto:[email protected]" target=3D"_blank">[email protected]</= a></font></div></div><div><div class=3D"h5"><div><br></div><div dir=3D""><d= iv class=3D"gmail_quote"> ---------- Forwarded message ----------<br>From: "Arnon Chitsakhon&quo= t; <<a href=3D"mailto:[email protected]" target=3D"_blank">arnonrx17@g= mail.com</a>><br>Date: Feb 22, 2014 11:23 AM<br>Subject: Bug installed a= nd compiled Report GNU MCSim (5.5.0)<br> To: <<a href=3D"mailto:[email protected]" target=3D"_blank">bug-mcsim@g= nu.org</a>><br>Cc: "Manupat Lohitnavy" <<a href=3D"mailto:m= [email protected]" target=3D"_blank">[email protected]</a>>, "Brad= Reisfeld" <<a href=3D"mailto:[email protected]" target=3D"_b= lank">[email protected]</a>>, "Kitza Kritsada" <<a hr= ef=3D"mailto:[email protected]" target=3D"_blank">[email protected]</= a>><br> <br><div dir=3D"ltr"><div><div><div>Dear Sir,<br><br>My name is Arnon. I= 9;m a student from Naresuan University in Thailand. I'm doing my work a= bout PKPB modeling. I'm interested in your GNU MCSim program for my wor= k. <br> <br>I have attempted to install GNU MCSim (5.5.0) on Ubuntu version 12.10 b= ut I found a few bugs when I installed and compiled. <br><br></div>I have u= sed the command prompt follow this email install package. <br>($ represents= the Ubuntu command prompt.)<br> </div><div><br></div><div>I must to very apologize you for the very long E-= mail to you first.<br></div><div>I hope that you help me about fix this pro= blem .<br><br></div><div><br></div>The First, I have used "./con= figure" command and result is follow.<br> <br>-----------------------------------------------------------------------= ---------------------<br>arc@arc-System-Product-Name:~/Documents/mcsim-5.5.= 0$ ./configure<br>checking for a BSD-compatible install... /usr/bin/install= -c<br> checking whether build environment is sane... yes<br>checking for a thread-= safe mkdir -p... /bin/mkdir -p<br>checking for gawk... no<br>checking for m= awk... mawk<br>checking whether make sets $(MAKE)... yes<br>checking whethe= r make supports nested variables... yes<br> checking for style of include used by make... GNU<br>checking for gcc... gc= c<br>checking whether the C compiler works... yes<br>checking for C compile= r default output file name... a.out<br>checking for suffix of executables..= . <br> checking whether we are cross compiling... no<br>checking for suffix of obj= ect files... o<br>checking whether we are using the GNU C compiler... yes<b= r>checking whether gcc accepts -g... yes<br>checking for gcc option to acce= pt ISO C89... none needed<br> checking dependency style of gcc... gcc3<br>checking for ar... ar<br>checki= ng the archiver (ar) interface... ar<br>checking build system type... x86_6= 4-unknown-linux-gnu<br>checking host system type... x86_64-unknown-linux-gn= u<br> checking how to print strings... printf<br>checking for a sed that does not= truncate output... /bin/sed<br>checking for grep that handles long lines a= nd -e... /bin/grep<br>checking for egrep... /bin/grep -E<br>checking for fg= rep... /bin/grep -F<br> checking for ld used by gcc... /usr/bin/ld<br>checking if the linker (/usr/= bin/ld) is GNU ld... yes<br>checking for BSD- or MS-compatible name lister = (nm)... /usr/bin/nm -B<br>checking the name lister (/usr/bin/nm -B) interfa= ce... BSD nm<br> checking whether ln -s works... yes<br>checking the maximum length of comma= nd line arguments... 1572864<br>checking whether the shell understands some= XSI constructs... yes<br>checking whether the shell understands "+=3D= "... yes<br> checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unkno= wn-linux-gnu format... func_convert_file_noop<br>checking how to convert x8= 6_64-unknown-linux-gnu file names to toolchain format... func_convert_file_= noop<br> checking for /usr/bin/ld option to reload object files... -r<br>checking fo= r objdump... objdump<br>checking how to recognize dependent libraries... pa= ss_all<br>checking for dlltool... no<br>checking how to associate runtime a= nd link libraries... printf %s\n<br> checking for archiver @FILE support... @<br>checking for strip... strip<br>= checking for ranlib... ranlib<br>checking command to parse /usr/bin/nm -B o= utput from gcc object... ok<br>checking for sysroot... no<br>checking for m= t... mt<br> checking if mt is a manifest tool... no<br>checking how to run the C prepro= cessor... gcc -E<br>checking for ANSI C header files... yes<br>checking for= sys/types.h... yes<br>checking for sys/stat.h... yes<br>checking for stdli= b.h... yes<br> checking for string.h... yes<br>checking for memory.h... yes<br>checking fo= r strings.h... yes<br>checking for inttypes.h... yes<br>checking for stdint= .h... yes<br>checking for unistd.h... yes<br>checking for dlfcn.h... yes<br= > checking for objdir... .libs<br>checking if gcc supports -fno-rtti -fno-exc= eptions... no<br>checking for gcc option to produce PIC... -fPIC -DPIC<br>c= hecking if gcc PIC flag -fPIC -DPIC works... yes<br>checking if gcc static = flag -static works... yes<br> checking if gcc supports -c -o file.o... yes<br>checking if gcc supports -c= -o file.o... (cached) yes<br>checking whether the gcc linker (/usr/bin/ld = -m elf_x86_64) supports shared libraries... yes<br>checking whether -lc sho= uld be explicitly linked in... no<br> checking dynamic linker characteristics... GNU/Linux ld.so<br>checking how = to hardcode library paths into programs... immediate<br>checking whether st= ripping libraries is possible... yes<br>checking if libtool supports shared= libraries... yes<br> checking whether to build shared libraries... yes<br>checking whether to bu= ild static libraries... yes<br>checking for gcc... (cached) gcc<br>checking= whether we are using the GNU C compiler... (cached) yes<br>checking whethe= r gcc accepts -g... (cached) yes<br> checking for gcc option to accept ISO C89... (cached) none needed<br>checki= ng dependency style of gcc... (cached) gcc3<br>checking for wish... no<br>c= hecking for gnuplot... no<br>checking for info... yes<br>checking for insta= ll-info... yes<br> checking for makeinfo... no<br>checking for main in -lgslcblas... yes<br>ch= ecking for main in -lgsl... yes<br>checking for main in -lm... yes<br>check= ing for main in -lsbml... no<br>checking for ANSI C header files... (cached= ) yes<br> checking float.h usability... yes<br>checking float.h presence... yes<br>ch= ecking for float.h... yes<br>checking limits.h usability... yes<br>checking= limits.h presence... yes<br>checking for limits.h... yes<br>checking for a= n ANSI C-conforming const... yes<br> checking whether struct tm is in sys/time.h or time.h... time.h<br>checking= for stdlib.h... (cached) yes<br>checking for GNU libc compatible malloc...= yes<br>checking for stdlib.h... (cached) yes<br>checking for GNU libc comp= atible realloc... yes<br> checking for floor... yes<br>checking for modf... yes<br>checking for pow..= . yes<br>checking for sqrt... yes<br>checking for strchr... yes<br>checking= that generated files are newer than configure... done<br>configure: creati= ng ./config.status<br> config.status: creating Makefile<br>config.status: creating mod/Makefile<br= >config.status: creating sim/Makefile<br>config.status: creating sim/makemc= sim<br>config.status: creating sim/makemcsimd<br>config.status: creating si= m/makemcsims<br> config.status: creating samples/perc/Makefile<br>config.status: creating do= c/Makefile<br>config.status: creating config.h<br>config.status: executing = depfiles commands<br>config.status: executing libtool commands<br><br> <br> <br><br><br>Second, I have used "make" command and result is foll= ow.<br>So, when this step I found the Error. <br><br>----------------------= ---------------------------------------------------------------<br>arc@arc-= System-Product-Name:~/Documents/mcsim-5.5.0$ make<br> make all-recursive<br>make[1]: Entering directory `/home/arc/Document= s/mcsim-5.5.0'<br>Making all in mod<br>make[2]: Entering directory `/ho= me/arc/Documents/mcsim-5.5.0/mod'<br>gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT getopt.o -MD -MP -MF .deps/getopt.Tpo -c -o g= etopt.o getopt.c<br> mv -f .deps/getopt.Tpo .deps/getopt.Po<br>gcc -DHAVE_CONFIG_H -I. -I.. = ; -g -O2 -MT lex.o -MD -MP -MF .deps/lex.Tpo -c -o lex.o = lex.c<br>mv -f .deps/lex.Tpo .deps/lex.Po<br>gcc -DHAVE_CONFIG_H -I. -I..&n= bsp; -g -O2 -MT lexerr.o -MD -MP -MF .deps/lexerr.Tpo -c = -o lexerr.o lexerr.c<br> mv -f .deps/lexerr.Tpo .deps/lexerr.Po<br>gcc -DHAVE_CONFIG_H -I. -I.. = ; -g -O2 -MT lexfn.o -MD -MP -MF .deps/lexfn.Tpo -c -o le= xfn.o lexfn.c<br>mv -f .deps/lexfn.Tpo .deps/lexfn.Po<br>gcc -DHAVE_CONFIG_= H -I. -I.. -g -O2 -MT mod.o -MD -MP -MF .deps/mod.T= po -c -o mod.o mod.c<br> mod.c: In function ‘PromptFilenames’:<br>mod.c:108:9: warning: = ignoring return value of ‘fgets’, declared with attribute warn_= unused_result [-Wunused-result]<br>mod.c:117:11: warning: ignoring return v= alue of ‘fgets’, declared with attribute warn_unused_result [-W= unused-result]<br> mv -f .deps/mod.Tpo .deps/mod.Po<br>gcc -DHAVE_CONFIG_H -I. -I..  = ; -g -O2 -MT modd.o -MD -MP -MF .deps/modd.Tpo -c -o modd.o mod= d.c<br>mv -f .deps/modd.Tpo .deps/modd.Po<br>gcc -DHAVE_CONFIG_H -I. -I..&n= bsp; -g -O2 -MT modi.o -MD -MP -MF .deps/modi.Tpo -c -o m= odi.o modi.c<br> mv -f .deps/modi.Tpo .deps/modi.Po<br>gcc -DHAVE_CONFIG_H -I. -I.. &nb= sp; -g -O2 -MT modiSBML.o -MD -MP -MF .deps/modiSBML.Tpo -c -o = modiSBML.o modiSBML.c<br>modiSBML.c: In function ‘CountLines’:<= br>modiSBML.c:276:10: warning: ignoring return value of ‘fscanf&rsquo= ;, declared with attribute warn_unused_result [-Wunused-result]<br> modiSBML.c:282:12: warning: ignoring return value of ‘fscanf’, = declared with attribute warn_unused_result [-Wunused-result]<br>mv -f .deps= /modiSBML.Tpo .deps/modiSBML.Po<br>gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT modiSBML2.o -MD -MP -MF .deps/modiSBML2.Tpo -c -o m= odiSBML2.o modiSBML2.c<br> mv -f .deps/modiSBML2.Tpo .deps/modiSBML2.Po<br>gcc -DHAVE_CONFIG_H -I. -I.= . -g -O2 -MT modo.o -MD -MP -MF .deps/modo.Tpo -c -= o modo.o modo.c<br>mv -f .deps/modo.Tpo .deps/modo.Po<br>gcc -DHAVE_CONFIG_= H -I. -I.. -g -O2 -MT strutil.o -MD -MP -MF .deps/s= trutil.Tpo -c -o strutil.o strutil.c<br> mv -f .deps/strutil.Tpo .deps/strutil.Po<br>/bin/bash ../libtool --ta= g=3DCC --mode=3Dlink gcc -g -O2 -o mod getopt= .o lex.o lexerr.o lexfn.o mod.o modd.o modi.o modiSBML.o modiSBML2.o modo.o= strutil.o -lm -lgsl -lgslcblas <br> libtool: link: gcc -g -O2 -o mod getopt.o lex.o lexerr.o lexfn.o mod.o modd= .o modi.o modiSBML.o modiSBML2.o modo.o strutil.o -lm -lgsl -lgslcbla= s<br>make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod'<b= r> Making all in sim<br>make[2]: Entering directory `/home/arc/Documents/mcsim= -5.5.0/sim'<br>/bin/bash ../libtool --tag=3DCC --mode= =3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. -ffloat-store -g = -O2 -MT libmodelu_la-modelu.lo -MD -MP -MF .deps/libmodelu_la-modelu.Tpo -c= -o libmodelu_la-modelu.lo `test -f 'modelu.c' || echo './'= `modelu.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -ffloat-store -g -O2 -= MT libmodelu_la-modelu.lo -MD -MP -MF .deps/libmodelu_la-modelu.Tpo -c mode= lu.c -fPIC -DPIC -o .libs/libmodelu_la-modelu.o<br>libtool: compile:&= nbsp; gcc -DHAVE_CONFIG_H -I. -I.. -ffloat-store -g -O2 -MT libmodelu_la-mo= delu.lo -MD -MP -MF .deps/libmodelu_la-modelu.Tpo -c modelu.c -o libmodelu_= la-modelu.o >/dev/null 2>&1<br> mv -f .deps/libmodelu_la-modelu.Tpo .deps/libmodelu_la-modelu.Plo<br>/bin/b= ash ../libtool --tag=3DCC --mode=3Dlink gcc -ffloat-store= -g -O2 -o <a href=3D"http://libmodelu.la" target=3D"_blank">li= bmodelu.la</a> -rpath /usr/local/lib libmodelu_la-modelu.lo -lm -lgsl= -lgslcblas <br> libtool: link: gcc -shared -fPIC -DPIC .libs/libmodelu_la-model= u.o -lm -lgsl -lgslcblas -O2 -Wl,-soname -Wl,= libmodelu.so.0 -o .libs/libmodelu.so.0.0.0<br>libtool: link: (cd ".lib= s" && rm -f "libmodelu.so.0" && ln -s "= libmodelu.so.0.0.0" "libmodelu.so.0")<br> libtool: link: (cd ".libs" && rm -f "libmodelu.so&qu= ot; && ln -s "libmodelu.so.0.0.0" "libmodelu.so"= ;)<br>libtool: link: ar cru .libs/libmodelu.a libmodelu_la-modelu.o<b= r> libtool: link: ranlib .libs/libmodelu.a<br>libtool: link: ( cd ".libs&= quot; && rm -f "<a href=3D"http://libmodelu.la" target=3D"_bla= nk">libmodelu.la</a>" && ln -s "../<a href=3D"http://libm= odelu.la" target=3D"_blank">libmodelu.la</a>" "<a href=3D"http://= libmodelu.la" target=3D"_blank">libmodelu.la</a>" )<br> /bin/bash ../libtool --tag=3DCC --mode=3Dcompile gcc -DHA= VE_CONFIG_H -I. -I.. -g -O2 -MT getopt.lo -MD -MP -= MF .deps/getopt.Tpo -c -o getopt.lo getopt.c<br>libtool: compile: gcc= -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo= -c getopt.c -fPIC -DPIC -o .libs/getopt.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT getopt.lo -= MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&= ;1<br>mv -f .deps/getopt.Tpo .deps/getopt.Plo<br>/bin/bash ../libtool = --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT lex.lo -MD -MP -MF .deps/lex.Tpo -c -o lex.lo= lex.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lex.lo -MD = -MP -MF .deps/lex.Tpo -c lex.c -fPIC -DPIC -o .libs/lex.o<br>libtool:= compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lex.lo -MD -MP -MF = .deps/lex.Tpo -c lex.c -o lex.o >/dev/null 2>&1<br> mv -f .deps/lex.Tpo .deps/lex.Plo<br>/bin/bash ../libtool --tag=3DCC&= nbsp; --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT lexerr.lo -MD -MP -MF .deps/lexerr.Tpo -c -o lexerr.lo le= xerr.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT l= exerr.lo -MD -MP -MF .deps/lexerr.Tpo -c lexerr.c -fPIC -DPIC -o .lib= s/lexerr.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexerr.lo -= MD -MP -MF .deps/lexerr.Tpo -c lexerr.c -o lexerr.o >/dev/null 2>&= ;1<br>mv -f .deps/lexerr.Tpo .deps/lexerr.Plo<br>/bin/bash ../libtool = --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT lexfn.lo -MD -MP -MF .deps/lexfn.Tpo -c -o le= xfn.lo lexfn.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexfn.lo -M= D -MP -MF .deps/lexfn.Tpo -c lexfn.c -fPIC -DPIC -o .libs/lexfn.o<br>= libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lexfn.lo -M= D -MP -MF .deps/lexfn.Tpo -c lexfn.c -o lexfn.o >/dev/null 2>&1<b= r> mv -f .deps/lexfn.Tpo .deps/lexfn.Plo<br>/bin/bash ../libtool --tag= =3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT list.lo -MD -MP -MF .deps/list.Tpo -c -o list.lo li= st.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lis= t.lo -MD -MP -MF .deps/list.Tpo -c list.c -fPIC -DPIC -o .libs/list.o= <br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT list.lo -MD= -MP -MF .deps/list.Tpo -c list.c -o list.o >/dev/null 2>&1<br>mv= -f .deps/list.Tpo .deps/list.Plo<br>/bin/bash ../libtool --tag=3DCC&= nbsp; --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT lsodes1.lo -MD -MP -MF .deps/lsodes1.Tpo -c -o lsodes1.lo= lsodes1.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes1.lo = -MD -MP -MF .deps/lsodes1.Tpo -c lsodes1.c -fPIC -DPIC -o .libs/lsode= s1.o<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lso= des1.lo -MD -MP -MF .deps/lsodes1.Tpo -c lsodes1.c -o lsodes1.o >/dev/nu= ll 2>&1<br> mv -f .deps/lsodes1.Tpo .deps/lsodes1.Plo<br>/bin/bash ../libtool --t= ag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. &nbs= p; -g -O2 -MT lsodes2.lo -MD -MP -MF .deps/lsodes2.Tpo -c -o ls= odes2.lo lsodes2.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT lsodes2.lo -MD -MP -MF .deps/lsodes2.Tpo -c lsodes2.c -fPI= C -DPIC -o .libs/lsodes2.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT lsodes2.lo = -MD -MP -MF .deps/lsodes2.Tpo -c lsodes2.c -o lsodes2.o >/dev/null 2>= &1<br>mv -f .deps/lsodes2.Tpo .deps/lsodes2.Plo<br>/bin/bash ../libtool= --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I..= -g -O2 -MT matutil.lo -MD -MP -MF .deps/matutil.Tp= o -c -o matutil.lo matutil.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutil.lo = -MD -MP -MF .deps/matutil.Tpo -c matutil.c -fPIC -DPIC -o .libs/matut= il.o<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mat= util.lo -MD -MP -MF .deps/matutil.Tpo -c matutil.c -o matutil.o >/dev/nu= ll 2>&1<br> mv -f .deps/matutil.Tpo .deps/matutil.Plo<br>/bin/bash ../libtool --t= ag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. &nbs= p; -g -O2 -MT matutilo.lo -MD -MP -MF .deps/matutilo.Tpo -c -o = matutilo.lo matutilo.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -= I.. -g -O2 -MT matutilo.lo -MD -MP -MF .deps/matutilo.Tpo -c matutilo.c&nbs= p; -fPIC -DPIC -o .libs/matutilo.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT matutilo.lo= -MD -MP -MF .deps/matutilo.Tpo -c matutilo.c -o matutilo.o >/dev/null 2= >&1<br>mv -f .deps/matutilo.Tpo .deps/matutilo.Plo<br>/bin/bash ../l= ibtool --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I= . -I.. -g -O2 -MT mh.lo -MD -MP -MF .deps/mh.Tpo -c= -o mh.lo mh.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mh.lo -MD -= MP -MF .deps/mh.Tpo -c mh.c -fPIC -DPIC -o .libs/mh.o<br>mh.c: In fun= ction 'ReadRestart2':<br>mh.c:1788:10: warning: ignoring return val= ue of 'fscanf', declared with attribute warn_unused_result [-Wunuse= d-result]<br> mh.c:1821:12: warning: ignoring return value of 'fscanf', declared = with attribute warn_unused_result [-Wunused-result]<br>mh.c: In function &#= 39;ReadRestart':<br>mh.c:1721:10: warning: ignoring return value of = 9;fscanf', declared with attribute warn_unused_result [-Wunused-result]= <br> mh.c:1743:12: warning: ignoring return value of 'fscanf', declared = with attribute warn_unused_result [-Wunused-result]<br>mh.c: In function &#= 39;DoMarkov':<br>mh.c:534:12: warning: ignoring return value of 'fs= canf', declared with attribute warn_unused_result [-Wunused-result]<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT mh.lo -MD -= MP -MF .deps/mh.Tpo -c mh.c -o mh.o >/dev/null 2>&1<br>mv -f .dep= s/mh.Tpo .deps/mh.Plo<br>/bin/bash ../libtool --tag=3DCC = --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. -g -O= 2 -MT optdsign.lo -MD -MP -MF .deps/optdsign.Tpo -c -o optdsign.lo optdsign= .c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT optdsign.lo= -MD -MP -MF .deps/optdsign.Tpo -c optdsign.c -fPIC -DPIC -o .libs/op= tdsign.o<br>optdsign.c: In function 'ReadAndSimulate':<br>optdsign.= c:384:10: warning: ignoring return value of 'fscanf', declared with= attribute warn_unused_result [-Wunused-result]<br> optdsign.c:395:14: warning: ignoring return value of 'fscanf', decl= ared with attribute warn_unused_result [-Wunused-result]<br>optdsign.c:401:= 12: warning: ignoring return value of 'fscanf', declared with attri= bute warn_unused_result [-Wunused-result]<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT optdsign.lo= -MD -MP -MF .deps/optdsign.Tpo -c optdsign.c -o optdsign.o >/dev/null 2= >&1<br>mv -f .deps/optdsign.Tpo .deps/optdsign.Plo<br>/bin/bash ../l= ibtool --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I= . -I.. -g -O2 -MT random.lo -MD -MP -MF .deps/rando= m.Tpo -c -o random.lo random.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT random.lo -= MD -MP -MF .deps/random.Tpo -c random.c -fPIC -DPIC -o .libs/random.o= <br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT random.= lo -MD -MP -MF .deps/random.Tpo -c random.c -o random.o >/dev/null 2>= &1<br> mv -f .deps/random.Tpo .deps/random.Plo<br>/bin/bash ../libtool --tag= =3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT sim.lo -MD -MP -MF .deps/sim.Tpo -c -o sim.lo sim.c= <br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT sim.lo = -MD -MP -MF .deps/sim.Tpo -c sim.c -fPIC -DPIC -o .libs/sim.o<br> sim.c: In function 'PromptFilenames':<br>sim.c:648:9: warning: igno= ring return value of 'fgets', declared with attribute warn_unused_r= esult [-Wunused-result]<br>sim.c:660:11: warning: ignoring return value of = 'fgets', declared with attribute warn_unused_result [-Wunused-resul= t]<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT sim.lo -MD = -MP -MF .deps/sim.Tpo -c sim.c -o sim.o >/dev/null 2>&1<br>mv -f = .deps/sim.Tpo .deps/sim.Plo<br>/bin/bash ../libtool --tag=3DCC &= nbsp; --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. = -g -O2 -MT simi.lo -MD -MP -MF .deps/simi.Tpo -c -o simi.lo simi.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simi.lo -MD= -MP -MF .deps/simi.Tpo -c simi.c -fPIC -DPIC -o .libs/simi.o<br>libt= ool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simi.lo -MD -MP= -MF .deps/simi.Tpo -c simi.c -o simi.o >/dev/null 2>&1<br> mv -f .deps/simi.Tpo .deps/simi.Plo<br>/bin/bash ../libtool --tag=3DC= C --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. &nbs= p; -g -O2 -MT siminit.lo -MD -MP -MF .deps/siminit.Tpo -c -o siminit.= lo siminit.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2= -MT siminit.lo -MD -MP -MF .deps/siminit.Tpo -c siminit.c -fPIC -DPI= C -o .libs/siminit.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT siminit.lo = -MD -MP -MF .deps/siminit.Tpo -c siminit.c -o siminit.o >/dev/null 2>= &1<br>mv -f .deps/siminit.Tpo .deps/siminit.Plo<br>/bin/bash ../libtool= --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I..= -g -O2 -MT simmonte.lo -MD -MP -MF .deps/simmonte.= Tpo -c -o simmonte.lo simmonte.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simmonte.lo= -MD -MP -MF .deps/simmonte.Tpo -c simmonte.c -fPIC -DPIC -o .libs/si= mmonte.o<br>simmonte.c: In function 'ReadSetPoints':<br>simmonte.c:= 302:9: warning: ignoring return value of 'fscanf', declared with at= tribute warn_unused_result [-Wunused-result]<br> simmonte.c:329:10: warning: ignoring return value of 'fscanf', decl= ared with attribute warn_unused_result [-Wunused-result]<br>simmonte.c: In = function 'InitSetPoints':<br>simmonte.c:275:10: warning: ignoring r= eturn value of 'fscanf', declared with attribute warn_unused_result= [-Wunused-result]<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simmonte.lo= -MD -MP -MF .deps/simmonte.Tpo -c simmonte.c -o simmonte.o >/dev/null 2= >&1<br>mv -f .deps/simmonte.Tpo .deps/simmonte.Plo<br>/bin/bash ../l= ibtool --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I= . -I.. -g -O2 -MT simo.lo -MD -MP -MF .deps/simo.Tp= o -c -o simo.lo simo.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simo.lo -MD= -MP -MF .deps/simo.Tpo -c simo.c -fPIC -DPIC -o .libs/simo.o<br>libt= ool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT simo.lo -MD -MP= -MF .deps/simo.Tpo -c simo.c -o simo.o >/dev/null 2>&1<br> mv -f .deps/simo.Tpo .deps/simo.Plo<br>/bin/bash ../libtool --tag=3DC= C --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I.. &nbs= p; -g -O2 -MT strutil.lo -MD -MP -MF .deps/strutil.Tpo -c -o strutil.= lo strutil.c<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2= -MT strutil.lo -MD -MP -MF .deps/strutil.Tpo -c strutil.c -fPIC -DPI= C -o .libs/strutil.o<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strutil.lo = -MD -MP -MF .deps/strutil.Tpo -c strutil.c -o strutil.o >/dev/null 2>= &1<br>mv -f .deps/strutil.Tpo .deps/strutil.Plo<br>/bin/bash ../libtool= --tag=3DCC --mode=3Dcompile gcc -DHAVE_CONFIG_H -I. -I..= -g -O2 -MT yourcode.lo -MD -MP -MF .deps/yourcode.= Tpo -c -o yourcode.lo yourcode.c<br> libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT yourcode.lo= -MD -MP -MF .deps/yourcode.Tpo -c yourcode.c -fPIC -DPIC -o .libs/yo= urcode.o<br>libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT= yourcode.lo -MD -MP -MF .deps/yourcode.Tpo -c yourcode.c -o yourcode.o >= ;/dev/null 2>&1<br> mv -f .deps/yourcode.Tpo .deps/yourcode.Plo<br>/bin/bash ../libtool -= -tag=3DCC --mode=3Dlink gcc -g -O2 -o <a href= =3D"http://libmcsim.la" target=3D"_blank">libmcsim.la</a> -rpath /usr/local= /lib getopt.lo lex.lo lexerr.lo lexfn.lo list.lo lsodes1.lo lsodes2.lo matu= til.lo matutilo.lo mh.lo optdsign.lo random.lo sim.lo simi.lo siminit.lo si= mmonte.lo simo.lo strutil.lo yourcode.lo <a href=3D"http://libmodelu.la" ta= rget=3D"_blank">libmodelu.la</a> -lm -lgsl -lgslcblas <br> libtool: link: gcc -shared -fPIC -DPIC .libs/getopt.o .libs/lex= .o .libs/lexerr.o .libs/lexfn.o .libs/list.o .libs/lsodes1.o .libs/lsodes2.= o .libs/matutil.o .libs/matutilo.o .libs/mh.o .libs/optdsign.o .libs/random= .o .libs/sim.o .libs/simi.o .libs/siminit.o .libs/simmonte.o .libs/simo.o .= libs/strutil.o .libs/yourcode.o -Wl,-rpath -Wl,/home/arc/Docume= nts/mcsim-5.5.0/sim/.libs ./.libs/libmodelu.so -lm -lgsl -lgslcblas -= O2 -Wl,-soname -Wl,libmcsim.so.0 -o .libs/libmcsim.so.0.0.0<br> libtool: link: (cd ".libs" && rm -f "libmcsim.so.0&q= uot; && ln -s "libmcsim.so.0.0.0" "libmcsim.so.0&quo= t;)<br>libtool: link: (cd ".libs" && rm -f "libmcsim= .so" && ln -s "libmcsim.so.0.0.0" "libmcsim.so&= quot;)<br> libtool: link: ar cru .libs/libmcsim.a getopt.o lex.o lexerr.o lexfn.= o list.o lsodes1.o lsodes2.o matutil.o matutilo.o mh.o optdsign.o random.o = sim.o simi.o siminit.o simmonte.o simo.o strutil.o yourcode.o<br>libtool: l= ink: ranlib .libs/libmcsim.a<br> libtool: link: ( cd ".libs" && rm -f "<a href=3D"htt= p://libmcsim.la" target=3D"_blank">libmcsim.la</a>" && ln -s &= quot;../<a href=3D"http://libmcsim.la" target=3D"_blank">libmcsim.la</a>&qu= ot; "<a href=3D"http://libmcsim.la" target=3D"_blank">libmcsim.la</a>&= quot; )<br> make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim'<br>Mak= ing all in doc<br>make[2]: Entering directory `/home/arc/Documents/mcsim-5.= 5.0/doc'<br>TEXINPUTS=3D".:$TEXINPUTS" \<br>  = ; MAKEINFO=3D'/bin/bash /home/arc/Documents/mcsim-5.5.0/missing makeinf= o -I .' \<br> texi2dvi --build-dir=3Dmcsim.t2d -o mcsim.dvi = ; \<br> mcsim.texinfo<br>/bin/bash: texi2dvi: command not= found<br>make[2]: *** [mcsim.dvi] Error 127<br>make[2]: Leaving directory = `/home/arc/Documents/mcsim-5.5.0/doc'<br> make[1]: *** [all-recursive] Error 1<br>make[1]: Leaving directory `/home/a= rc/Documents/mcsim-5.5.0'<br>make: *** [all] Error 2<br><br><br><br><br= ><br></div><div>Third, I have uesd "make check" command and resul= t is follow.<br> </div><div>So, I got error again.<br></div><div><br>-----------------------= ---------------------------------------------------------------------------= -<br>arc@arc-System-Product-Name:~/Documents/mcsim-5.5.0$ make check<br> Making check in mod<br>make[1]: Entering directory `/home/arc/Documents/mcs= im-5.5.0/mod'<br>make[1]: Nothing to be done for `check'.<br>make[1= ]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod'<br>Making ch= eck in sim<br> make[1]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim'<br>ma= ke[1]: Nothing to be done for `check'.<br>make[1]: Leaving directory `/= home/arc/Documents/mcsim-5.5.0/sim'<br>Making check in doc<br>make[1]: = Entering directory `/home/arc/Documents/mcsim-5.5.0/doc'<br> TEXINPUTS=3D".:$TEXINPUTS" \<br> MAKEINFO=3D= 9;/bin/bash /home/arc/Documents/mcsim-5.5.0/missing makeinfo -I= .' \<br> texi2dvi --build-dir=3Dmcsim.t2d -o m= csim.dvi \<br> mcsim.texinfo<br>/bin/bash: texi2dvi= : command not found<br> make[1]: *** [mcsim.dvi] Error 127<br>make[1]: Leaving directory `/home/arc= /Documents/mcsim-5.5.0/doc'<br>make: *** [check-recursive] Error 1<br><= br></div><div><br><br><br><br></div><div>Then I have used "make instal= l" command I got error.<br> </div><div><br>------------------------------------------------------------= ----------------------------------------<br></div><div>arc@arc-System-Produ= ct-Name:~/Documents/mcsim-5.5.0$ sudo su<br>[sudo] password for arc: <br> root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0# make install<= br>Making install in mod<br>make[1]: Entering directory `/home/arc/Document= s/mcsim-5.5.0/mod'<br>make[2]: Entering directory `/home/arc/Documents/= mcsim-5.5.0/mod'<br> /bin/mkdir -p '/usr/local/bin'<br> /bin/bash ../libtool= --mode=3Dinstall /usr/bin/install -c mod '/usr/local/bin&#= 39;<br>libtool: install: /usr/bin/install -c mod /usr/local/bin/mod<br>&nbs= p;/bin/mkdir -p '/usr/local/share/mcsim/mod'<br> /usr/bin/install -c -m 644 getopt.c getopt.h hungtype.h lex.c lex.h l= exerr.c lexerr.h lexfn.c lexfn.h mod.c mod.h modd.c modd.h modi.c modi.h mo= diface.h modiSBML.c modiSBML2.c modiSBML.h modo.c modo.h strutil.c strutil.= h '/usr/local/share/mcsim/mod'<br> make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod'<br>mak= e[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/mod'<br>Making= install in sim<br>make[1]: Entering directory `/home/arc/Documents/mcsim-5= .5.0/sim'<br> make[2]: Entering directory `/home/arc/Documents/mcsim-5.5.0/sim'<br>&n= bsp;/bin/mkdir -p '/usr/local/bin'<br> /usr/bin/install -c mak= emcsim makemcsims makemcsimd '/usr/local/bin'<br> /bin/mkdir -= p '/usr/local/lib'<br> /bin/bash ../libtool --mode=3Dinstall /usr/bin/install -c= <a href=3D"http://libmodelu.la" target=3D"_blank">libmodelu.la= </a> <a href=3D"http://libmcsim.la" target=3D"_blank">libmcsim.la</a> '= /usr/local/lib'<br>libtool: install: /usr/bin/install -c .libs/libmodel= u.so.0.0.0 /usr/local/lib/libmodelu.so.0.0.0<br> libtool: install: (cd /usr/local/lib && { ln -s -f libmodelu.so.0.0= .0 libmodelu.so.0 || { rm -f libmodelu.so.0 && ln -s libmodelu.so.0= .0.0 libmodelu.so.0; }; })<br>libtool: install: (cd /usr/local/lib &&am= p; { ln -s -f libmodelu.so.0.0.0 libmodelu.so || { rm -f libmodelu.so &= & ln -s libmodelu.so.0.0.0 libmodelu.so; }; })<br> libtool: install: /usr/bin/install -c .libs/libmodelu.lai /usr/local/lib/<a= href=3D"http://libmodelu.la" target=3D"_blank">libmodelu.la</a><br>libtool= : install: warning: relinking `<a href=3D"http://libmcsim.la" target=3D"_bl= ank">libmcsim.la</a>'<br> libtool: install: (cd /home/arc/Documents/mcsim-5.5.0/sim; /bin/bash /home/= arc/Documents/mcsim-5.5.0/libtool --tag CC --mode=3Drelink gcc -g -O2= -o <a href=3D"http://libmcsim.la" target=3D"_blank">libmcsim.la</a> -rpath= /usr/local/lib getopt.lo lex.lo lexerr.lo lexfn.lo list.lo lsodes1.lo lsod= es2.lo matutil.lo matutilo.lo mh.lo optdsign.lo random.lo sim.lo simi.lo si= minit.lo simmonte.lo simo.lo strutil.lo yourcode.lo <a href=3D"http://libmo= delu.la" target=3D"_blank">libmodelu.la</a> -lm -lgsl -lgslcblas )<br> libtool: relink: gcc -shared -fPIC -DPIC .libs/getopt.o .libs/l= ex.o .libs/lexerr.o .libs/lexfn.o .libs/list.o .libs/lsodes1.o .libs/lsodes= 2.o .libs/matutil.o .libs/matutilo.o .libs/mh.o .libs/optdsign.o .libs/rand= om.o .libs/sim.o .libs/simi.o .libs/siminit.o .libs/simmonte.o .libs/simo.o= .libs/strutil.o .libs/yourcode.o -L/usr/local/lib -lmodelu -lm= -lgsl -lgslcblas -O2 -Wl,-soname -Wl,libmcsim.so.0 -o .l= ibs/libmcsim.so.0.0.0<br> libtool: install: /usr/bin/install -c .libs/libmcsim.so.0.0.0T /usr/local/l= ib/libmcsim.so.0.0.0<br>libtool: install: (cd /usr/local/lib && { l= n -s -f libmcsim.so.0.0.0 libmcsim.so.0 || { rm -f libmcsim.so.0 &&= ln -s libmcsim.so.0.0.0 libmcsim.so.0; }; })<br> libtool: install: (cd /usr/local/lib && { ln -s -f libmcsim.so.0.0.= 0 libmcsim.so || { rm -f libmcsim.so && ln -s libmcsim.so.0.0.0 lib= mcsim.so; }; })<br>libtool: install: /usr/bin/install -c .libs/libmcsim.lai= /usr/local/lib/<a href=3D"http://libmcsim.la" target=3D"_blank">libmcsim.l= a</a><br> libtool: install: /usr/bin/install -c .libs/libmodelu.a /usr/local/lib/libm= odelu.a<br>libtool: install: chmod 644 /usr/local/lib/libmodelu.a<br>libtoo= l: install: ranlib /usr/local/lib/libmodelu.a<br>libtool: install: /usr/bin= /install -c .libs/libmcsim.a /usr/local/lib/libmcsim.a<br> libtool: install: chmod 644 /usr/local/lib/libmcsim.a<br>libtool: install: = ranlib /usr/local/lib/libmcsim.a<br>libtool: finish: PATH=3D"/usr/loca= l/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/g= ames:/sbin" ldconfig -n /usr/local/lib<br> ----------------------------------------------------------------------<br>L= ibraries have been installed in:<br> /usr/local/lib<br><br>If y= ou ever happen to want to link against installed libraries<br>in a given di= rectory, LIBDIR, you must either use libtool, and<br> specify the full pathname of the library, or use the `-LLIBDIR'<br>flag= during linking and do at least one of the following:<br> - add= LIBDIR to the `LD_LIBRARY_PATH' environment variable<br> &n= bsp; during execution<br> - add LIBDIR to the `LD_RUN_PATH' environment variable<br>= during linking<br> - use the `-Wl,-rpa= th -Wl,LIBDIR' linker flag<br> - have your system administr= ator add LIBDIR to `/etc/ld.so.conf'<br><br> See any operating system documentation about shared libraries for<br>more i= nformation, such as the ld(1) and ld.so(8) manual pages.<br>---------------= -------------------------------------------------------<br> /bin/mkdir= -p '/usr/local/include'<br> /usr/bin/install -c -m 644 matutil.h list.h lex.h sim.h lexfn.h hungt= ype.h modiface.h modelu.h random.h yourcode.h '/usr/local/include'<= br> /bin/mkdir -p '/usr/local/share/mcsim/sim'<br> /usr/b= in/install -c -m 644 getopt.c getopt.h hungtype.h lex.c lex.h lexerr.c lexe= rr.h lexfn.c lexfn.h list.c list.h lsodes.h lsodes1.c lsodes2.c matutil.c m= atutil.h matutilo.c matutilo.h mh.c mh.h modiface.h optdsign.c optdsign.h r= andom.c random.h sim.c sim.h simi.c simi.h siminit.c siminit.h simmonte.c s= immonte.h simo.c simo.h strutil.c strutil.h yourcode.c yourcode.h modelu.c = '/usr/local/share/mcsim/sim'<br> /usr/bin/install -c -m 644 modelu.h '/usr/local/share/mcsim/sim&#= 39;<br>make[2]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim'= <br>make[1]: Leaving directory `/home/arc/Documents/mcsim-5.5.0/sim'<br= > Making install in doc<br>make[1]: Entering directory `/home/arc/Documents/m= csim-5.5.0/doc'<br>TEXINPUTS=3D".:$TEXINPUTS" \<br> &nbs= p; MAKEINFO=3D'/bin/bash /home/arc/Documents/mcsim-5.5.0/missing = makeinfo -I .' \<br> texi2dvi --build-dir=3Dmcsim.t2d -o mcsim.dvi = ; \<br> mcsim.texinfo<br>/bin/bash: texi2dvi: command not= found<br>make[1]: *** [mcsim.dvi] Error 127<br>make[1]: Leaving directory = `/home/arc/Documents/mcsim-5.5.0/doc'<br> make: *** [install-recursive] Error 1<br><br><br><br></div><div>After that = I go to the "usr/local/bin" directory I didn't find "xmc= sim" in that path.<br></div><div>and the "usr/local/share" d= irectory I didn't find "xmcsim" too. <br> <br></div><div>then, I go to the "mcsim/samples/perc" directory I= started to type "mod perc.model" I got follow this.<br><br>-----= ---------------------------------------------------------------------------= --------------------<br> root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# = mod perc.model<br><br>________________________________________<br><br>Mod v= 5.5.0 - Model Generator for MCSim<br><br>MCSim and associated software come= s with ABSOLUTELY NO WARRANTY;<br> This is free software, and you are welcome to redistribute it<br>under cert= ain conditions; see the GNU General Public License.<br><br><br>* Created C = model file 'model.c'.<br><br><br><br><br></div><div>After that, I h= ave used "makemcsim perc.model" but mcsim.perc wasn't created= . and I got follow this.<br> </div><div><br>------------------------------------------------------------= --------------------------------------<br></div><div>root@arc-System-Produc= t-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# makemcsim perc.model<b= r> Creating model.c file from perc.model ...<br><br>__________________________= ______________<br><br>Mod v5.5.0 - Model Generator for MCSim<br><br>MCSim a= nd associated software comes with ABSOLUTELY NO WARRANTY;<br>This is free s= oftware, and you are welcome to redistribute it<br> under certain conditions; see the GNU General Public License.<br><br><br>* = Created C model file 'model.c'.<br><br><br>Compiling model ...<br>m= odel.c:75:15: fatal error: R.h: No such file or directory<br>compilation te= rminated.<br> root@arc-System-Product-Name:/home/arc/Documents/mcsim-5.5.0/samples/perc# = <br><br><br><br></div><div>Cloud you help me please ?<br></div><div><br></d= iv><div>Thank you so much.<br><br></div><div>Arnon <br></div></div> </div> </div></div></div></div> </div> </blockquote></div><br></div></div></div></div></div></div> --001a11c33b02a72d0d04f2ffbc3e-- --===============7167109783079242923== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Help-mcsim mailing list [email protected] https://lists.gnu.org/mailman/listinfo/help-mcsim --===============7167109783079242923==--