biojava3 getting the features from alignedsequence
Hara Dilley <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi, I would like to align a set of sequences against a scaffold and get the list of the modifications for each aligned sequence. I am using biojava3 I have tried to create a profile thinking that I can get the AlignedSequences from it but that it appears to be null. Here is part of my code: Profile<ProteinSequence, AminoAcidCompound> profile = Alignments.getMultipleSequenceAlignment(lst); Profile.getAlignedSequence(0); Can someone please point to an example for this or to the classes I have to use. Thank you, Hara _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l