Re: Write seq in Genbank format
Richard Holland <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
I don't think BJ3 has a Genbank parser yet (unless I missed something?), so under the older version of BJ you can do it like this: RichSequence rs = ....; // this is your annotated sequence object RichSequence.IOTools.writeGenbank(System.out, rs, null); // this writes it to STDOUT in Genbank format cheers, Richard On 21 Jan 2011, at 18:48, Khalil El Mazouari wrote: > Hi All, > > how to output annotated sequences in Genbank format? > > Thanks, > > khalil > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l