Re: average structure
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
A geometric average should be easy to calculate. All NMR models have the same number of atoms, so you could just average over all alternative positions for an atom and use that to build up a mean structure... However I would take that with a grain of salt and make sure there are no distance violations by visual inspection and some quality control scripts. There are standard/ideal coordinates available for all amino acids, that you could use to compare with the distances between atoms in your average structure. Andreas On Wed, Feb 9, 2011 at 11:22 AM, Jay Vyas <[email protected]> wrote: > Hi Guys : I was also wondering if biojava supported creating an average or > mean structure from a bundle........ > > -- > Jay Vyas > MMSB/UCHC > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l