Re: biojava3 and symbol
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi Francois, SymbolLists are part of BioJava 1.8 (the legacy version) and not 3.0. You might want to get the previous version installed. It is available from Maven as well... Andreas 2011/2/25 François Le Fevre <[email protected]>: > Hello > I am a newbie in biojava3. > I have installed the maven version. > > I have a question : is there a way to go from DNASequence to SymbolList? > I would like to study codons and their frequency in several organisms. > It was easy with biojava with > > "SymbolList codons = SymbolListViews.windowedSymbolList(seq, 3);" > and > "DistributionTrainerContext" > > But now I am a little lost between maven biojava3 and biojava. > So if anyone could explain me how to get codons view from DNASequence, it > could be great. > > Thanks a lot! > > Francois > > > -- > ---------------------- > Francois LE FEVRE > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l