Re: equality of proteins based on their aminoacid sequence signature
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi François, you could try to compare the string representation of the sequences... Andreas 2011/3/9 Andy Yates <[email protected]>: > Hi Francois, > > Neither Compounds nor Sequences have an over-ridden equals() & hashcode() method which is why you're seeing the current behaviour. > > Andy > > On 9 Mar 2011, at 20:12, François Le Fevre wrote: > >> Dear all, >> >> I would like to know if 2 proteins that have the same sequence of aminoacid should be equals? >> I was wandering that 2 Sequence<AminoAcidCompound> that have exactly the same string signature should be the same. >> But it seems to be not the case. >> Is it normal? >> >> Thank for your help. >> >> >> Sequence<AminoAcidCompound> protein1 = MKRISTTITTTITITTGNGAG hash=801818331 >> Sequence<AminoAcidCompound> protein2 = MKRISTTITTTITITTGNGAG hash=700804192 >> >> protein1.equals(protein2) return false. >> >> Francois >> >> -- >> ---------------------- >> Francois LE FEVRE >> >> _______________________________________________ >> Biojava-l mailing list - [email protected] >> http://lists.open-bio.org/mailman/listinfo/biojava-l > > -- > Andrew Yates Ensembl Genomes Engineer > EMBL-EBI Tel: +44-(0)1223-492538 > Wellcome Trust Genome Campus Fax: +44-(0)1223-494468 > Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/ > > > > > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l