Re: Isoelectric point and molecular weight calculations with BioJava - Conserns
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi Udana, > 1. Package org.biojava.bio.proteomics - Class_IsoelectricPointCalc > In the method "getIsoelectricPoint(SymbolList peptide)" they have used a > SymbolList type as the parameter ,if we are going to port to BioJava3.0 > ,What are the possible use of parameter instead of SymbolList in BioJava1.8? The counterpart in the 3.x series would be to use directly the sequence interface or pass in a string representation of a sequence. > 2. Package org.biojava.bio.proteomics - Class_MassCalc > In "calcTermMass" method they have added extra H if MH_PLUS is true.I am > little bit confuse why we have to add a extra H when calculating term mass? > and What is the importance of MH_PLUS prpperty? not sure, somebody else might be able to say more about this > If there are sample codes or demos how to use these classes and method, can > anyone guide me to those? Did you see the cookbook ? http://biojava.org/wiki/BioJava:CookBook1.7#Proteomics Andreas _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l