Re: Isoelectric point and molecular weight calculations with BioJava
Peter Troshin <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi Martin, Great start - you were the first to complete the coding exercise! I realize that the exercise missed a few important points including the format of the resulting submission, so now I added that. It would help if you could update your project accordingly. You can find further details on the http://biojava.org/wiki/Short_coding_exercise page. Do not forget to write your project plan it is very important too. I'd recommend you to keep an eye on the BioJava mailing list discussions, as you may find some useful information there. Thanks for your interest in the project and good luck with your application! Peter P.S. I know I can download the source via Google SVN but I would prefer to have everything in one place. On 24/03/2011 19:32, Martin Koch wrote: Dear Peter, i just read about the short programming exercise for GSoC. and just started coding around http://code.google.com/p/findends/ my next step is to introduce multi threading.. But actually i have a working version and strong interest to participate all the best martin 2011/2/24 Peter Troshin <[email protected] > Hi, I've noticed that BioJava up to about version 1.7 had an org.biojava.bio.proteomics package, which had methods for isoelectric point and molecular weight calculations for peptides. I could not find this package in the BioJava 3.0.1 API. I’d like to use these methods and wonder if there are any equivalent methods available in the latest version of BioJava? Thank you for your help, Kind regards, Peter Dr Peter Troshin Bioinformatics Software Developer Phone: +44 (0)1382 388589 Fax: +44 (0)1382 385764 The Barton Group College of Life Sciences Medical Sciences Institute University of Dundee Dundee DD1 5EH UK _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l