Biojava implementation of CE algorithm
Ambikesh Jayal <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi All, There seems to be some discrepancy for some protein sequences in results of Biojava implementation of CE algorithm and the implementation on CE website http://cl.sdsc.edu/ce/ce_align.html For example between protein sequences [2aza.A] AND [1paz]. Other such example are 1cew.I and 1mol.A, 1cid and 2rhe. Is there some reason for this discrepancy? Results using BioJava implementation of CE algorithm ************* [2aza.A] AND [1paz] ************ CE afpChain.getTotalRmsdOpt() 2.5267815014062553 afpChain.getOptLength() 82 Results using CE website http://cl.sdsc.edu/ce/ce_align.html ************* [2aza.A] AND [1paz] ************ Rmsd = 2.9Å Aligned/gap positions = 84/49 Kind Regards, Ambi. _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l