Re: add Source Organism to genbank
Richard Holland <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
It only knows the display name if you've told it what it is. Therefore you either have to load up the NCBI taxonomy in memory or via a BioSQL database. cheers, Richard On 12 Jun 2011, at 21:01, Khalil El Mazouari wrote: > Hi, > > I am trying to set Organism to RichSequence via: > > richSequence.setTaxon(new SimpleNCBITaxon(taxid)); //ncbi tax id > > the genbank ouptut: > > SOURCE > ORGANISM > . > FEATURES Location/Qualifiers > source 1..394 > /mol_type="genomic DNA" > /strand="+" > /organism="" > /db_xref="taxon:10090" > > How to add Organism display name to the Source Field and to the annotation organism? > > Thanks > > khalil > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: [email protected] http://www.eaglegenomics.com/ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l