Re: make feature to create embl or genbank file
Hedwig Kurka <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
I already built the set<RichFeature> and populated it. Now I want to give it the RichSequence. But when I do that in that line: rs.setRichFeatureSet(rfeatSet); It says, that it needs a Set<Feature> Regards, Hedwig > I'm not sure what you're trying to do - if you want to build a Set, you can just use the standard Java Collections API to create and populate a Set? > > cheers, > Richard > > On 30 Jun 2011, at 09:12, Hedwig Kurka wrote: > > >> Hi Richard, >> >> Thank you for your answer. >> If I create RichFeature objects, then I have to do conversions in that line: >> RichFeature f = (RichFeature) seq.createFeature(t); >> and then I have in that line: >> rs.setRichFeatureSet(rfeatSet); >> the problem, that I have a Set<RichFeature> and not Set<Feature>, but I >> didn't find a method builds a Set containing RichFeature objects on a >> RichSequence. Is there one? >> >> >> >>> The conversion from Feature to RichFeature does its best but is not >>> ideal. As you already have a RichSequence object to work with then you >>> would be better creating native RichFeature objects instead of doing >>> conversions. >>> >>> Richard Holland >>> Eagle Genomics Ltd >>> Sent from my HTC >>> >>> >>> >>> >> > -- > Richard Holland, BSc MBCS > Operations and Delivery Director, Eagle Genomics Ltd > T: +44 (0)1223 654481 ext 3 | E: [email protected] > http://www.eaglegenomics.com/ > > > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l