Re: No. of gaps in aligned sequences
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepw15crxKRkk5sYOdRruMCt_3xBrTdNa4=W7iCVy6KkBvg@mail.gmail.com> |
Hi Tariq, Can you send us the sample code / DB accession IDs so we can try to reproduce this? Andreas On Wed, Jul 6, 2011 at 4:37 AM, Muhammad Tariq Pervez <[email protected]> wrote: > > > Hi, Dear all, > I am working on the development of MSA application using BioJava. I want to make clear a thing. It is that when two or more protein sequences are aligned the '-' is shown more times in an aligned sequence than the gaps display by the method of alSeq.getNumGaps(). 'alSeq' is an aligned sequence. For example, if there are actual 50 '-' in an aligned sequence but the method shows it only 30. What is the difference between these two results. > > Best Regards > > > Tariq, Phd Scholar > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l