Re: Local DB BLAST Comparison/Search
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepygQfaaaWxL=gB-xBEoSxRzx0Wz_R-6j-0h_uNBkmUL9g@mail.gmail.com> |
Hi Mark, regarding Blast, our recommendation is generally to get the XML output and then just parse the data that you are interested in. Andreas On Thu, Jul 7, 2011 at 1:56 PM, Mark Stewart <[email protected]> wrote: > I'm a relatively new programmer, so I'm probably missing a number of obvious > things, but if someone wouldn't mind pointing me in the right direction, > that'd be great, because I'm having trouble figuring stuff out from the API. > > Just generally, which of the alignment/BLAST-related classes do I want to be > looking over and using if I want to write some JAVA for doing similar > sequence searches of a local database using the BLAST algorithm? > > -M > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l