Re: why can't biojava fold RNA?
Daniel Quest <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
I don't quite think this answers the question. If you want to execute c/c++/fortran/legacy code from java, you can do a system exec from within java. Or you can play around with jni but my experiences with that have not been good Does biojava have the ability to execute a stand alone program? If not I have some code lying around you guys can have Daniel Sent from my iPod On Sep 20, 2011, at 11:11 AM, Andreas Prlic <[email protected]> wrote: > If all your code is in Java and you have binaries for some external > software you can easily wrap it from Java and trigger the execution. > > Andreas > > On Tue, Sep 20, 2011 at 2:09 AM, quan zou <[email protected]> wrote: >> Thanks, however, there is no java code. it cannot be imported into my java >> project. >> >> 2011/9/20 Andreas Prlic <[email protected]> >>> >>> Hi Quan, >>> >>> the Vienna RNA package is available as open source. Did you take a look >>> at it? >>> >>> Andreas >>> >>> >>> On Mon, Sep 19, 2011 at 9:18 PM, quan zou <[email protected]> wrote: >>>> Dear all, >>>> >>>> Is there any java program or jar which can fold a RNA sequence to >>>> a >>>> secondary structure? Such as RNAfold? >>>> >>>> Why RNAfold/ Vienna Package have not been contained in Biojava? >>>> >>>> Quan >>>> _______________________________________________ >>>> Biojava-l mailing list - [email protected] >>>> http://lists.open-bio.org/mailman/listinfo/biojava-l >>>> >> >> > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l