couple of new structure alignment & protein domain features
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepxUGK+ZnBV6Sm0h32+LoH6zGcLGVJ+uDE7tV1Mh-pmQPA@mail.gmail.com> |
Hi, I just committed a couple of new features related to protein structure alignments and working with protein domains: - better support for SCOP domains: - rather than using a local SCOP installation the default is now to fetch SCOP domain data via remote web service calls (much more memory friendly) - the user interface for structure alignments now has a new auto-suggest panel that makes it easier to enter SCOP domain IDs - structures that don't have SCOP domains assigned, can get automatically split into domains with ProteinDomainParser (also can be fetched from remote) - database searches now display % sequence ID in the alignment as a new column. Andreas _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l