Re: Multiple Sequence Alignment - Limits?
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mkBsBJhzfHKtgquytXPV=hF0TZNYAM8cfCcen=QfmAj+A@mail.gmail.com> |
Hi Andreas, I will try that later today if that makes any difference; I ran a larger alignment batch overnight, and I noticed that this limit seems to have been a coincidence; HOWEVER, the aligned sequences are always not as many as the input sequences, is this caused by memory constraints or how can I influence that? Hannes On Tue, Oct 18, 2011 at 23:01, Andreas Prlic <[email protected]> wrote: > Hi Hannes, > > did you try to increase memory settings for your JVM? e.g. -Xmx500M > > Andreas > > On Tue, Oct 18, 2011 at 2:46 AM, Hannes Brandstätter-Müller > <[email protected]> wrote: >> On Tue, Oct 18, 2011 at 11:32, Hannes Brandstätter-Müller >> <[email protected]> wrote: >>> Hi again! >>> >>> I am quite happy with the Multiple Sequence Alignment, but I noticed >>> that there seems to be a limit of 132 Sequences that are present in >>> the final alignment - is this some kind of hardcoded limit, or can I >>> work around that somehow? >>> >>> Hannes >>> >> >> Sorry, I counted that wrong. I had 132 lines, that is 66 sequences in >> fasta format. Is there a way to work around that limit? >> >> Hannes >> >> _______________________________________________ >> Biojava-l mailing list - [email protected] >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l