Re: [Biojava-dev] Genbank import
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepwWaNavngzLciPR_KPpo-uGKvV++BTTbU4r_tnhYpvn2g@mail.gmail.com> |
Hi Ed, Interesting that you found this, this ancient tutorial has not been modified since the early 2000s and has been replaced with the Cookbook pages: http://biojava.org/wiki/BioJava:CookBook Some of the code for this is available as part of the BioJava-legacy (v 1.8) project. BioJava3 currently does not have a Genbank parser yet, only fasta. I added it to the (new) missing features page : http://www.biojava.org/wiki/BioJava3_Feature_Requests Andreas On Sun, Oct 30, 2011 at 7:54 PM, Ed Beaty <[email protected]> wrote: > Hello all. Is it possible to import Genbank (*.gb) format files using BioJava 3? I can't find the SeqIOTools class described in the GeneralReader example in the http://www.biojava.org/docs/bj_in_anger/ReadingGES.htm doc. > Thanks, > Ed Beaty > _______________________________________________ > biojava-dev mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-dev > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l