Calculating edit distance between 2 DNA Sequences
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mkr452JMDZkDuMS0+cDc+kZwRyV-h_raR=mkMLGhYuHbg@mail.gmail.com> |
Hi! Is there a Class/Method in Biojava that calculates the Levenshtein distance between two sequences? I could not find anything in the docs at first search. I need to compare 2 DNASequences (or Strings) and get the number of insertions, deletions, and substitutions. Ideally, there would be an option to abort the comparison if the number of mismatches exceeds a certain number. Hannes _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l