Re: Calculating edit distance between 2 DNA Sequences
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepyuTfmjLd9My0vGMUbMc39CE+QEUR84PO-stpDcKjYtHw@mail.gmail.com> |
Hi Hannes, you are right, this does not exist yet. Somebody else asked the same question a few weeks ago. As such it would be great if you could provide a patch, there might be other people interested in that, too. Andreas On Mon, Nov 7, 2011 at 5:39 AM, Hannes Brandstätter-Müller <[email protected]> wrote: > Following up: > > If there is no such thing, should I make it available if I write it? > > Hannes > > On Thu, Nov 3, 2011 at 14:08, Hannes Brandstätter-Müller > <[email protected]> wrote: >> Hi! >> >> Is there a Class/Method in Biojava that calculates the Levenshtein >> distance between two sequences? I could not find anything in the docs >> at first search. >> >> I need to compare 2 DNASequences (or Strings) and get the number of >> insertions, deletions, and substitutions. Ideally, there would be an >> option to abort the comparison if the number of mismatches exceeds a >> certain number. >> >> Hannes >> > > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l