Re: Calculating edit distance between 2 DNA Sequences
Chris Friedline <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hannes, If you really want to use Levenstein distance, there's a method in Apache commons lang StringUtils. Chris On Nov 3, 2011, at 9:08 AM, Hannes Brandstätter-Müller wrote: > Hi! > > Is there a Class/Method in Biojava that calculates the Levenshtein > distance between two sequences? I could not find anything in the docs > at first search. > > I need to compare 2 DNASequences (or Strings) and get the number of > insertions, deletions, and substitutions. Ideally, there would be an > option to abort the comparison if the number of mismatches exceeds a > certain number. > > Hannes > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l