Re: Is a modification of the FASTA parser for my needs easy or should I implement something else?
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mnZVMFb4qj6v=sk9xTuE=bEfwu3LHSstT27K28eCfdP4g@mail.gmail.com> |
On Wed, Dec 21, 2011 at 15:21, Andreas Prlic <[email protected]> wrote: > Hi Hannes, > > if this is a more frequently used file format, would be great to get a > parser for this... Any patches are welcome ! ;-) > > Andreas I just put together some kludgy thing that works for me now, but there needs to be something done for this. I mailed a bit back and forth with Peter, and he pointed me to http://news.open-bio.org/news/2009/12/nar-fastq-format/ where Biojava is mentioned to understand that quality information too. I guess that got lost in the move to 3.0? If nothing happens until March/April, I'll pick up this as my pet project and work to help biojava to support FASTQ and the FASTA/QUAL format. But until then I'm totally swamped. If someone else (perhaps the one who wrote the FASTA Parser initially) could pick that up, that would be great. Hannes _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l