Cookbook entry - feedback please
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mm1KkML8m=AnHZ9-QVOk1StQQTgYcyvf_my+rr4VbfhNQ@mail.gmail.com> |
Hi! I recently ran into the problem of having 2 very similar DNA Sequences and wanting to get (1) a difference count and (2) a consensus sequence. I asked on stackoverflow and biostar.stackexchange.com for some input, and the answers pointed me towards enums and a lookup table using these. So I sat down and wrote that (that LUT took me quite some time, I hope I did not make errors in there) and made a small class to quickly get to the result. I post the code as cookbook page for future reference, possible inclusion of the code into the library and of course, feedback. http://biojava.org/wiki/BioJava:CookBook:Core:SequenceCompare Hannes _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l