FASTA Header Parser
Hannes Brandstätter-Müller <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mnn=Pt8t5R38EYSorJgfo-oUFCkgW1eyu1qM_Vy9qZYWQ@mail.gmail.com> |
Hi there - I just came across a puzzling "feature" of the GenericFastaHeaderParser. It seems to throw away everything in the header after (and including) "length=" (see GenericFastaHeaderParser.java lines 71-76) ... Why? Also, is there a Fasta Header Parser I can use that does not mess about with the header? I really would like to have that as key (still working on my FASTA/QUAL parsing) and not having that (only in the originalHeader, not in the Hashmap key) really breaks stuff. Hannes _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l