Fwd: read fasta entry by entry
"P. Troshin" <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAAT4F8mchq_MxS8j-eq5vTX-U=zBpWyywuP5tVWwNmC9uiOOZg@mail.gmail.com> |
Hi, Try SequenceUtil.readFasta(InputStream in). It would read sequences regardless of the type. This is a small tool in the disorder predictor package. Hope that helps, Regards, Peter On 9 May 2012 04:45, Mic <[email protected]> wrote: > Hello, > I have found this > http://biojava.org/wiki/BioJava:CookBook:Core:FastaReadWrite example, but > it looks like that the whole fasta file is stored in memory. > > Is it possible to read any fasta entry by entry i.e. without > to specify whether it is DNA/Protein? > > Thank you in advance. > > Mic > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l