Re: Are there EJB entities for BioSQL?
Andreas Prlic <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CALthepwCeEnot-RviEscZD4xLy4j--gDsf+ZmjhvmDYR+77GBw@mail.gmail.com> |
Hi Jan, There is no biosql ORM mapping for biojava 3 currently. If you need something like that you would need to use biojava 1 or patch biojava 3... Andreas On Fri, Aug 3, 2012 at 5:47 AM, Jan T Kim <[email protected]> wrote: > Dear All, > > is there a set of EJB 3 entities that correspond to BioSQL available? > I've noticed that there are is a Hibernate mapping in biojavax [1, 2] -- > is that the recommended ORM solution? > > Personally, I'd prefer a set of classes, with the suitable annotations > from the javax.persistence package applied (@Entity, @Id etc.) to match > the BioSQL tables. > > Apparently there have been initiatives in this direction (e.g. [3]), has > any of these made it into mainstream BioJava? If not, why not? > > Best regards, Jan > > [1] http://biojava.org/wiki/BioJava:BioJavaXDocs > [2] http://www.biosql.org/wiki/BioJava_BioSQL_ORM > [3] http://www.biojava.org/pipermail/biojava-l/2008-October/006387.html > -- > +- Jan T. Kim -------------------------------------------------------+ > | email: [email protected] | > | WWW: http://www.jtkim.dreamhosters.com/ | > *-----=< hierarchical systems are for files, not for humans >=-----* > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l