Re: Stockholm Parser is on Biojava 3.0.5 SNAPSHOT

Hi Amr,

This is great! Did you try to load a couple of  different files from the
Pfam web site? That should be good for testing...

Andreas


On Tue, Nov 6, 2012 at 3:11 AM, Amr AL-HOSSARY <[email protected]>wrote:

> Dear all,
> I added stockholm parser beta to the package "org.biojava3.alignment.io"
> of "biojava3-alignment" project.It should be ready on on the latest Biojava
> snapshot build after 20 mins.
> As stockholm format structure is not well defined (at least in contrast to
> PDB), Not all of the features are well implemented yet.Please test it
> against different files you have, and feed me back; so that I start with
> the most important/most used features first.
> Thanks to Marko Vas for his code base. I built on his code  and that saved
> a lot of unnecessary time.
>
>
> Best Regards,
>
>
> Amr AL-HOSSARY
>
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> Amr Ali AL-HOSSARY |
> Ph.D. Student |
> International PhD program in Computational Biology and Bioinformatics |
>   School of Computer Engineering |
>   Nanyang Technological University  |
> Singapore |
> Email:  [email protected]
>   |
>
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>
>
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>


-- 
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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