Re: BioJava, oracle problem with jdk
Radomir <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Ahh, i`m almost home. Now i have problem with 2 methods from java 1.6. In alignment package there is a 2 methods copyof() and isempty() that can`t be compile with 1.5: [ERROR] C:\Users\radamek\workspace\maven.1361187141685\biojava\biojava3-alignment\src\main\java\org\biojava3\alignment\SimpleSubstitutionMatrix.java:[145,33] cannot find symbol [ERROR] symbol : method isEmpty() [ERROR] location: class java.lang.String [ERROR] C:\Users\radamek\workspace\maven.1361187141685\biojava\biojava3-alignment\src\main\java\org\biojava3\alignment\SimpleSubstitutionMatrix.java:[185,28] cannot find symbol [ERROR] symbol : method copyOf(short[],int) [ERROR] location: class java.util.Arrays Can somebody help me?? i found that i should make new methods, i really don`t know how to do that ( i don`t know java very well..) Radomir wrote: > > Hello, i`m trying to apply my project with oracle and biojava. I`m trying > to make a database for pairwise alignment ( FATCAT or CE ). These > algorithms are in biojava3+ packages. When i`m loading jar`s to mine > database i got error ( oracle is running on 1.5 jdk and biojava 3 is > compiled on 1.6, there are no chances to upgrade jdk on oracle ).. I find > on biojava wiki that version 3.0 of biojava is running on 1.5+ but when i > loaded these version to my database there was the same error. Here is my > question - is there any chances to get biojava 3 compiled with jdk 1.5 ? ? > Sorry for my english > -- View this message in context: http://old.nabble.com/BioJava%2C-oracle-problem-with-jdk-tp34984653p35040465.html Sent from the BioJava mailing list archive at Nabble.com. _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l