Re: Phred Quality Scores and .qual format
Janier J. Ramírez <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Thanks for reply Yes I know it, I'm using Biojava 1.X to read SCF files, but many of my SCF files can't be read by Biojava. And my other problem is that I need to obtain the Phred Quality Scores from Abi an Scf files, and I don't know how to do this. Please Help Thanks ----- Mensaje original ----- De: "Hannes Brandstätter-Müller" <[email protected]> Para: "Janier J. Ramírez" <[email protected]> CC: "biojava-l" <[email protected]> Enviados: Viernes, 29 de Marzo 2013 7:52:41 Asunto: Re: [Biojava-l] Phred Quality Scores and .qual format SCF can currently only be read in biojava-legacy. I am planning to port the code to BioJave 3 after the switch to git (i.e. next month) Until then, I think there are legacy-cookbook examples on how to read scf files. Hannes On Fri, Mar 29, 2013 at 5:48 AM, Janier J. Ramírez < [email protected] > wrote: Hi guys ! I'm investigating for the whole genome assembly using AMOS Project. I need to obtain the Phred Quality Scores from Abi an Scf files, to then buil a .qual file, but my dude is obtaining the Scores, I have tried many time but I can't reach it !. Sorry for my English. Thanks for your time -- Universidad de las Ciencias Informáticas Janier J. Ramírez Landaburo Facultad - 6 Tel-837-3121 http://www.uci.cu _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l http://www.uci.cu _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l