Getting reverse complement
Janier J. Ramírez <[email protected]>
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
I'm triyng to get the reverse complement from a sequence with gaps (represented as ':'), but biojava thow an IllegalSymbolException, is this a bug or what is the symbol to represent gaps in biojava ? Here is the error. org.biojava.bio.symbol.IllegalSymbolException: This tokenization doesn't contain character: ':' at org.biojava.bio.seq.io.CharacterTokenization.parseTokenChar(CharacterTokenization.java:175) at org.biojava.bio.seq.io.CharacterTokenization$TPStreamParser.characters(CharacterTokenization.java:246) at org.biojava.bio.symbol.SimpleSymbolList.<init>(SimpleSymbolList.java:178) at org.biojava.bio.seq.DNATools.createDNA(DNATools.java:204) Greetings Janier -- Universidad de las Ciencias Informáticas Janier J. Ramírez Landaburo Facultad - 6 Tel-837-3121 http://www.uci.cu _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l