Re: reading genbank data
Hannes Brandstätter-Müller <[email protected]> Fri, 24 May 2013 09:09:05 +0200
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <CAPXi2mnt-u1V6uF_rT=kmYBA9ZG1GhJCFde1mrXjT+beT0_qkQ@mail.gmail.com> |
I still need to finish up the last task (unfortunately I'm a bit short on spare time currently) but I guess since it's parsing, I could work on that... Hannes On Fri, May 24, 2013 at 7:36 AM, Andreas Prlic <[email protected]> wrote: > Hi Hannes, > > would you be interested in taking this one on? > > Thanks, > > Andreas > > > On Thu, May 23, 2013 at 1:14 PM, Hannes Brandstätter-Müller < > [email protected]> wrote: > >> Well, it doesn't look like that was ported to biojava 3 yet. >> >> We'll add that to the todo list… >> >> >> On Thu, May 23, 2013 at 8:53 PM, Ben Bimber <[email protected]> wrote: >> >> > Hello, >> > >> > To date, I have used BioJava3 for very limited work such as read/writing >> > FASTA files. I am trying to determine the best method to read and parse >> > sequence in genbank format using java. As far as i can tell, legacy >> > BioJava has classes to support this (RichSequence.IOTools); however, I >> do >> > not see anything in BioJava3 related to parsing Genbank. Does BioJava3 >> > have support for parsing genbank files? >> > >> > Thanks in advance for any help. >> > >> > -Ben >> > _______________________________________________ >> > Biojava-l mailing list - [email protected] >> > http://lists.open-bio.org/mailman/listinfo/biojava-l >> > >> >> _______________________________________________ >> Biojava-l mailing list - [email protected] >> http://lists.open-bio.org/mailman/listinfo/biojava-l >> > > > > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l