Working with mmCIF files

Phelelani Mpangase <[email protected]> Thu, 13 Jun 2013 10:11:26 +0200
Newsgroups gmane.comp.java.bio.general
Message-ID <CAA5xgzJFhaAPS-SXfJ8QaU27UvZiQp4hG820S3TL7d4z18zqdQ@mail.gmail.com>
Hello

I am new to the Java progrmming language, and I am currently working on a
project where I have to find information about a protein structure from the
mmCIF file. I would like to extract information about non-polymers in
structures (_pdbx_entity_nonpoly table) using BioJava. How do I go about
achieving this?

I have been able to parse the structure using the SimpleMMcifConsumer, but
I am unclear as to the steps I need to follow from there. Is the
PdbxEntityNonPoly the right class to use? How do I use this class to
achieve to get the data from the "_pdbx_entity_nonpoly"?

Regards,
Phele
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