java 8 - Biojava3 java.util.concurrent.ExecutionException: java.lang.ExceptionInInitializerError
Khalil El Mazouari <[email protected]> Fri, 7 Nov 2014 21:56:18 +0100
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi I am porting my code from java 7 to java 8. Biojava3.alignment is not working on java 8! While it was OK on java 7 All jars are in the classpath. Thanks Khalil java.util.concurrent.ExecutionException: java.lang.ExceptionInInitializerError at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:192) at org.biojava3.alignment.Alignments.getListFromFutures(Alignments.java:289) at org.biojava3.alignment.Alignments.runPairwiseScorers(Alignments.java:612) at org.biojava3.alignment.Alignments.getMultipleSequenceAlignment(Alignments.java:180) ... Caused by: java.lang.ExceptionInInitializerError at org.biojava3.alignment.SimpleAlignedSequence.setLocation(SimpleAlignedSequence.java:358) at org.biojava3.alignment.SimpleAlignedSequence.<init>(SimpleAlignedSequence.java:88) at org.biojava3.alignment.SimpleProfile.<init>(SimpleProfile.java:118) at org.biojava3.alignment.SimpleSequencePair.<init>(SimpleSequencePair.java:86) at org.biojava3.alignment.SimpleSequencePair.<init>(SimpleSequencePair.java:69) at org.biojava3.alignment.NeedlemanWunsch.setProfile(NeedlemanWunsch.java:71) at org.biojava3.alignment.template.AbstractMatrixAligner.align(AbstractMatrixAligner.java:342) at org.biojava3.alignment.template.AbstractPairwiseSequenceAligner.getPair(AbstractPairwiseSequenceAligner.java:112) at org.biojava3.alignment.FractionalIdentityScorer.align(FractionalIdentityScorer.java:112) at org.biojava3.alignment.FractionalIdentityScorer.getScore(FractionalIdentityScorer.java:105) at org.biojava3.alignment.template.CallablePairwiseSequenceScorer.call(CallablePairwiseSequenceScorer.java:53) at org.biojava3.alignment.template.CallablePairwiseSequenceScorer.call(CallablePairwiseSequenceScorer.java:38) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.NullPointerException at java.util.Collections$UnmodifiableCollection.<init>(Collections.java:1026) at java.util.Collections$UnmodifiableList.<init>(Collections.java:1302) at java.util.Collections.unmodifiableList(Collections.java:1287) at org.biojava3.core.sequence.location.template.AbstractLocation.<init>(AbstractLocation.java:111) at org.biojava3.core.sequence.location.template.AbstractLocation.<init>(AbstractLocation.java:85) at org.biojava3.core.sequence.location.SimpleLocation.<init>(SimpleLocation.java:57) at org.biojava3.core.sequence.location.SimpleLocation.<init>(SimpleLocation.java:53) at org.biojava3.core.sequence.location.template.Location.<clinit>(Location.java:48) ... 16 more java.util.concurrent.ExecutionException: java.lang.NoClassDefFoundError: Could not initialize class org.biojava3.core.sequence.location.SimpleLocation …. _______________________________________________ Biojava-l mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biojava-l