Re: (no subject)

How to get and parse data from the PDB:

https://github.com/biojava/biojava-tutorial/blob/master/structure/firststeps.md

How to get the data once parsed the file into a Structure object:

https://github.com/biojava/biojava-tutorial/blob/master/structure/structure-data-model.md

Jose


On 14.08.2015 22:30, ADITYA MANTHA wrote:
> well , i tried to. But i could not find a proper solution . Can you 
> tell the specific example with some sample codes . As i am new to 
> BioInformatics .
>
> On Sat, Aug 15, 2015 at 1:48 AM, Jose Manuel Duarte 
> <[email protected] <mailto:[email protected]>> wrote:
>
>     Did you check the biojava tutorial? It explains how to do the file
>     parsing and how to retrieve the data:
>
>     https://github.com/biojava/biojava-tutorial
>
>     Jose
>
>
>
>
>     On 14.08.2015 20:13, ADITYA MANTHA wrote:
>>     Currently, I am trying to implement Chou Fasman Algorithm in Java
>>     . For this i need to retrieve information regarding Name ,
>>     Primary Sequence and Secondary Structure information  . Can
>>     someone help me out how to parse this data from a PDB file .
>>
>>     -- 
>>     Best Regards
>>
>>     ADITYA MANTHA
>>     Sophomore
>>     Instrumentation Engineering
>>     Department of Electrical Engineering
>>     IIT KHARAGPUR
>>     9800192364
>>
>>
>>     _______________________________________________
>>     Biojava-l mailing list  [email protected]  <mailto:[email protected]>
>>     http://mailman.open-bio.org/mailman/listinfo/biojava-l
>
>
>     _______________________________________________
>     Biojava-l mailing list  - [email protected]
>     <mailto:[email protected]>
>     http://mailman.open-bio.org/mailman/listinfo/biojava-l
>
>
>
>
> -- 
> Best Regards
>
> ADITYA MANTHA
> Sophomore
> Instrumentation Engineering
> Department of Electrical Engineering
> IIT KHARAGPUR
> 9800192364

_______________________________________________
Biojava-l mailing list  -  [email protected]
http://mailman.open-bio.org/mailman/listinfo/biojava-l