PDBFileParser Error for PDB files without ATOM part for some chains defined in the header
Guoying Qi <[email protected]> Tue, 15 Sep 2015 11:21:52 +0100
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Hi there, I am using BioJava 4.1.0 and got the following error message for PDB 2ja5 when no ATOM for chain N, P and T when StoreEmptySeqRes is on. I am sure the parser should cope with this kind of issues. Could somebody have a look? Thanks. Guoying Exception in thread "main" java.lang.NullPointerException at org.biojava.nbio.structure.io.PDBFileParser.storeUnAlignedSeqRes(PDBFileParser.java:3026) at org.biojava.nbio.structure.io.PDBFileParser.triggerEndFileChecks(PDBFileParser.java:2973) at org.biojava.nbio.structure.io.PDBFileParser.parsePDBFile(PDBFileParser.java:2769) _______________________________________________ Biojava-l mailing list - [email protected] http://mailman.open-bio.org/mailman/listinfo/biojava-l