Postdoctoral Fellow Position in Structural Bioinformatics at RCSB PDB/UC San Diego
"Rose, Peter" <[email protected]> Thu, 4 Aug 2016 22:29:31 +0000
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <D3C90FCB.2E8E2%[email protected]> |
--===============5389253630861613045== Content-Language: en-US Content-Type: multipart/alternative; boundary="_000_D3C90FCB2E8E2pwroseucsdedu_" --_000_D3C90FCB2E8E2pwroseucsdedu_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Summary: We are looking for a talented and highly motivated postdoc to join= our multidisciplinary team at UC San Diego. The Challenge: Develop innovate analysis, data integration, query, and visu= alization tools for 3D biomolecular structures to help accelerate research = and training in biology, medicine, and related disciplines. In this project= , we will employ the latest advances in computer science to develop highly = interactive features and scalable services and workflows for the RCSB PDB w= ebsite (http://www.rcsb.org). This position is a unique opportunity to engage in leading edge research, d= evelopment, and outreach activities of the RCSB PDB with worldwide impact. Qualifications: Ph.D. in one or more of the following research areas =B7 Structural Bioinformatics, or related field with a focus on softw= are development =B7 Structural Biology with a focus on software development =B7 Computer Science with a focus on bioinformatics algorithm develop= ment or visualization Demonstrated proficiency in a high-level programming language, such as Java= or Python and experience with state of the art software development tools.= Experience with front-end programming languages (JavaScript) and libraries= . Strong skills in problem solving and algorithm design are required. High = productivity demonstrated by publications and contributions to open source = software projects. Experience in the development of modern web applications= , user interface design, or scientific visualization is a plus. Excellent w= ritten and oral communication skills. Note, this position is reviewed annually on the basis of performance and ca= n be renewed. Our Environment: The Structural Bioinformatics Group (http://bioinformatics.sdsc.edu<http://= bioinformatics.sdsc.edu/>) at the San Diego Supercomputer Center (SDSC) (ht= tp://www.sdsc.edu<http://www.sdsc.edu/>) is involved in research and develo= pment activities centered around 3D structures of proteins and nucleic acid= s, the integration of structural data with other domains such as Medicine, = Genomics, Biology, Drug Discovery, and the development of scalable solution= to Big Data problems in Structural Bioinformatics. Our group leads the RCS= B Protein Data Bank (PDB) west-coast operations. The RCSB PDB (http://www.r= csb.org<http://www.rcsb.org/>) represents the preeminent source of experime= ntally determined macromolecular structure information for research and tea= ching in biology, biological chemistry, and medicine. With over 300,000 uni= que users from over 160 countries around the world, the RCSB PDB is one of = the leading worldwide Biological Databases. Our group is also involved in t= he National Institutes of Health (NIH) Big Data to Knowledge (BD2K) initiat= ive. As an Organized Research Unit of UC San Diego, SDSC is a world leader in da= ta-intensive computing and cyber infrastructure, providing resources, servi= ces, and expertise to the national research community, including industry a= nd academia. To apply, please send cover letter and resume to Dr. Peter Rose (peter.rose= @rcsb.org<mailto:[email protected]>). -- Peter Rose, Ph.D. Site Head, RCSB Protein Data Bank West (http://www.rcsb.org<http://www.rcsb= .org/>) Principal Investigator, Structural Bioinformatics Laboratory (http://bioinf= ormatics.sdsc.edu<http://bioinformatics.sdsc.edu/>) San Diego Supercomputer Center (http://www.sdsc.edu<http://www.sdsc.edu/>) University of California, San Diego +1-858-822-5497<file://localhost/tel/%252B1-858-822-5497> --_000_D3C90FCB2E8E2pwroseucsdedu_ Content-Type: text/html; charset="iso-8859-1" Content-ID: <[email protected]> Content-Transfer-Encoding: quoted-printable <html> <head> <meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-= 1"> </head> <body style=3D"word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-lin= e-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-fami= ly: Calibri, sans-serif;"> <div> <div> <div><span style=3D"font-family: Arial; font-size: 10pt; letter-spacing: -0= .25pt; text-align: justify;">Summary: We are looking for a talented and hig= hly motivated postdoc to join our multidisciplinary team at UC San Diego.</= span></div> </div> </div> <span id=3D"OLK_SRC_BODY_SECTION"> <div style=3D"word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line= -break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-famil= y: Calibri, sans-serif;"> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial"><o:p>&nbs= p;</o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial">The Chall= enge: Develop innovate analysis, data integration, query, and visualization= tools for 3D biomolecular structures to help accelerate research and train= ing in biology, medicine, and related disciplines. In this project, we will employ the latest advances in comput= er science to develop highly interactive features and scalable services and= workflows for the RCSB PDB website (</span><a href=3D"http://www.rcsb.org"= ><span style=3D"mso-bidi-font-family:Arial">http://www.rcsb.org</span></a><= span style=3D"mso-bidi-font-family:Arial">). <o:p></o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial"><o:p>&nbs= p;</o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial">This posi= tion is a unique opportunity to engage in leading edge research, developmen= t, and outreach activities of the RCSB PDB with worldwide impact.<o:p></o:p= ></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial"><o:p>&nbs= p;</o:p></span></p> <p class=3D"MsoNormal">Qualifications: Ph.D. in one or more of the followin= g research areas<o:p></o:p></p> <p class=3D"MsoListParagraphCxSpFirst" style=3D"text-indent:-.25in;mso-list= :l0 level1 lfo1"> <!--[if !supportLists]--><span style=3D"font-size: 10pt;"><span style=3D"ms= o-list:Ignore">=B7<span style=3D"font-style: normal; font-variant: normal; = font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Tim= es New Roman';"> </span></span></span><!--[endif]--><span style=3D"font-size:10.0pt;font-fam= ily:Arial">Structural Bioinformatics, or related field with a focus on soft= ware development<o:p></o:p></span></p> <p class=3D"MsoListParagraphCxSpMiddle" style=3D"text-indent:-.25in;mso-lis= t:l0 level1 lfo1"> <!--[if !supportLists]--><span style=3D"font-size: 10pt;"><span style=3D"ms= o-list:Ignore">=B7<span style=3D"font-style: normal; font-variant: normal; = font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Tim= es New Roman';"> </span></span></span><!--[endif]--><span style=3D"font-size:10.0pt;font-fam= ily:Arial">Structural Biology with a focus on software development<o:p></o:= p></span></p> <p class=3D"MsoListParagraphCxSpLast" style=3D"text-indent:-.25in;mso-list:= l0 level1 lfo1"> <!--[if !supportLists]--><span style=3D"font-size: 10pt;"><span style=3D"ms= o-list:Ignore">=B7<span style=3D"font-style: normal; font-variant: normal; = font-weight: normal; font-size: 7pt; line-height: normal; font-family: 'Tim= es New Roman';"> </span></span></span><!--[endif]--><span style=3D"font-size:10.0pt;font-fam= ily:Arial">Computer Science with a focus on bioinformatics algorithm develo= pment or visualization<o:p></o:p></span></p> <p class=3D"MsoNormal" align=3D"left" style=3D"text-align:left"><o:p> = </o:p></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial">Demonstra= ted proficiency in a high-level programming language, such as Java or Pytho= n and experience with state of the art software development tools. Experien= ce with front-end programming languages (JavaScript) and libraries. Strong skills in problem solving and algorithm= design are required. High productivity demonstrated by publications and co= ntributions to open source software projects. Experience in the development= of modern web applications, user interface design, or scientific visualization is a plus. Excellent written= and oral communication skills.<o:p></o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial"><o:p>&nbs= p;</o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial">Note, thi= s position is reviewed annually on the basis of performance and can be rene= wed.<o:p></o:p></span></p> <p class=3D"MsoNormal"><span style=3D"mso-bidi-font-family:Arial"><o:p>&nbs= p;</o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">Our Environment:<o:p></o:p></spa= n></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial"><o:p> </o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">The Structural Bioinformatics Gr= oup (</span><a href=3D"http://bioinformatics.sdsc.edu/"><span style=3D"mso-= bidi-font-family:Arial;color:#0000E9">http://bioinformatics.sdsc.edu</span>= </a><span style=3D"mso-bidi-font-family:Arial">) at the San Diego Supercomputer Center (SDSC) (</span><a href=3D"http://www= .sdsc.edu/"><span style=3D"mso-bidi-font-family: Arial;color:#0000E9">http://www.sdsc.edu</span></a><span style=3D"mso-bidi-= font-family: Arial">) is involved in research and development activities centered around 3D structures of proteins and nucleic acids, th= e integration of structural data with other domains such as Medicine, Genom= ics, Biology, Drug Discovery, and the development of scalable solution to B= ig Data problems in Structural Bioinformatics. Our group leads the RCSB Protein Data Bank (PDB) west-coast operations. Th= e RCSB PDB (</span><a href=3D"http://www.rcsb.org/"><span style=3D"mso-bidi= -font-family:Arial;color:#0000E9">http://www.rcsb.org</span></a><span style= =3D"mso-bidi-font-family:Arial">) represents the preeminent source of experimentally determined macromolecular structur= e information for research and teaching in biology, biological chemistry, a= nd medicine. With over 300,000 unique users from over 160 countries around = the world, the RCSB PDB is one of the leading worldwide Biological Databases. Our group is also involved in = the National Institutes of Health (NIH) Big Data to Knowledge (BD2K) initia= tive.<o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial"><o:p> </o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">As an Organized Research Unit of= UC San Diego, SDSC is a world leader in data-intensive computing and cyber= infrastructure, providing resources, services, and expertise to the nation= al research community, including industry and academia.<o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial"><o:p> </o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">To apply, please send cover lett= er and resume to Dr. Peter Rose (<a href=3D"mailto:[email protected]">pet= [email protected]</a>).<o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial"><o:p> </o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">--<o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial;color:#1A1A1A">Peter Rose, Ph.D.<= /span><span style=3D"mso-bidi-font-family:Arial"><o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial;color:#1A1A1A">Site Head, RCSB Pr= otein Data Bank West (</span><a href=3D"http://www.rcsb.org/"><span style= =3D"mso-bidi-font-family:Arial;color:#103CC0">http://www.rcsb.org</span></a= ><span style=3D"mso-bidi-font-family:Arial;color:#1A1A1A">)</span><span sty= le=3D"mso-bidi-font-family:Arial"><o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial">Principal Investigator, Structur= al Bioinformatics Laboratory (</span><a href=3D"http://bioinformatics.sdsc.= edu/"><span style=3D"mso-bidi-font-family:Arial; color:#103CC0">http://bioinformatics.sdsc.edu</span></a><span style=3D"mso-= bidi-font-family: Arial;color:#1A1A1A">)<o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial;color:#1A1A1A">San Diego Supercom= puter Center (</span><a href=3D"http://www.sdsc.edu/"><span style=3D"mso-bi= di-font-family:Arial;color:#0000E9">http://www.sdsc.edu</span></a><span sty= le=3D"mso-bidi-font-family:Arial;color:#1A1A1A">)</span><span style=3D"mso-= bidi-font-family:Arial"><o:p></o:p></span></p> <p class=3D"MsoNormal" style=3D"mso-pagination:none;mso-layout-grid-align:n= one; text-autospace:none"> <span style=3D"mso-bidi-font-family:Arial;color:#3E003F">University of Cali= fornia, San Diego</span><span style=3D"mso-bidi-font-family:Arial"><o:p></o= :p></span></p> <p class=3D"MsoNormal"><!--[if gte mso 9]><xml> <o:DocumentProperties> <o:Revision>0</o:Revision> <o:TotalTime>0</o:TotalTime> <o:Pages>1</o:Pages> <o:Words>530</o:Words> <o:Characters>3021</o:Characters> <o:Company>RCSB PDB @ UCSD</o:Company> <o:Lines>25</o:Lines> <o:Paragraphs>7</o:Paragraphs> <o:CharactersWithSpaces>3544</o:CharactersWithSpaces> <o:Version>14.0</o:Version> </o:DocumentProperties> <o:OfficeDocumentSettings> <o:RelyOnVML/> <o:AllowPNG/> </o:OfficeDocumentSettings> </xml><![endif]--><!--[if gte mso 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