Parsing embl format with biojava4

Dario Beraldi <[email protected]> Wed, 28 Dec 2016 09:30:54 +0000
Newsgroups gmane.comp.java.bio.general
Message-ID <CAEa0nG4y01CvDTt7kcQEN=8pch70QXnj=BDGkpyJHF8Hrd0pHg@mail.gmail.com>
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Hello,

First, thanks for the great Biojava project!

Is it possible to parse embl files using (Bio)Java?

By Googling "biojava  embl format" I get some hits for the legacy Biojava
1.9 but I'm wondering weather I could (should?) use the more recent Biojava
4?

A more general question... Which is the primary source of documentation for
Biojava 4? Is it the tutorial at https://github.com/biojava/biojava-tutorial
together with the Javadocs (http://biojava.org/docs/api4.2.1/)?

I find the home page Biojava.org a little confusing... The tutorial page
http://biojava.org/wiki/BioJava:CookBook4.0/ gives me a 404 error. The wiki
pages http://biojava.org/wiki.html seem a mixture of various topics.

Thank you!

Dario

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<div dir=3D"ltr">Hello,<div><br></div><div>First, thanks for the great Bioj=
ava project!</div><div><br></div><div>Is it possible to parse embl files us=
ing (Bio)Java?=C2=A0</div><div><br></div><div>By Googling &quot;biojava =C2=
=A0embl format&quot; I get some hits for the legacy Biojava 1.9 but I&#39;m=
 wondering weather I could (should?) use the more recent Biojava 4?</div><d=
iv><br></div><div>A more general question... Which is the primary source of=
 documentation for Biojava 4? Is it the tutorial at <a href=3D"https://gith=
ub.com/biojava/biojava-tutorial">https://github.com/biojava/biojava-tutoria=
l</a> together with the Javadocs (<a href=3D"http://biojava.org/docs/api4.2=
.1/">http://biojava.org/docs/api4.2.1/</a>)?=C2=A0</div><div><br></div><div=
>I find the home page Biojava.org a little confusing... The tutorial page=
=C2=A0<a href=3D"http://biojava.org/wiki/BioJava:CookBook4.0/">http://bioja=
va.org/wiki/BioJava:CookBook4.0/</a> gives me a 404 error. The wiki pages=
=C2=A0<a href=3D"http://biojava.org/wiki.html">http://biojava.org/wiki.html=
</a> seem a mixture of various topics.</div><div><br></div><div>Thank you!<=
/div><div><br></div><div>Dario</div></div>

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