Re: java.lang.ExceptionInInitializerError in protein disorder module, JRonn

--===============3043048822298900516==
Content-Type: multipart/alternative; boundary=001a113f1416aea33a0549be7327

--001a113f1416aea33a0549be7327
Content-Type: text/plain; charset=UTF-8

Hi again,
I was using biojava-protein-disorder-4.1.0, when I used 4.2.6, it worked
fine.



On Thu, Mar 2, 2017 at 1:18 AM, Srikanth Bezawada <[email protected]>
wrote:

> Hi BioJava,
>
> I get the following stack trace when I try to find disorder scores using
> biojava protein disorder module. Can you please let me know the fix ?
> Thanks in advance.
>
>
> Exception in thread "main" java.lang.ExceptionInInitializerError
> at biojavausage.BioJavaUsage.main(BioJavaUsage.java:*25*)
> Caused by: java.util.InputMismatchException
> at java.util.Scanner.throwFor(Scanner.java:864)
> at java.util.Scanner.next(Scanner.java:1485)
> at java.util.Scanner.nextInt(Scanner.java:2117)
> at java.util.Scanner.nextInt(Scanner.java:2076)
> at org.biojava.nbio.ronn.ModelLoader.loadModels(ModelLoader.java:175)
> at org.biojava.nbio.ronn.Jronn.<clinit>(Jronn.java:55)
> ... 1 more
>
>
>
> Here is the line *25* which is the same line from the test folder of
> biojava github.
>
> float[] rawProbabilityScores = Jronn.getDisorderScores(new
> FastaSequence("name", "LLRGRHLMNGTMIMRPWNFLNDHHFPKFFPHLIEQQAIWLADWWRKKHC"
> +
> "RPLPTRAPTMDQWDHFALIQKHWTANLWFLTFPFNDKWGWIWFLKDWTPGSADQAQRACTWFFCHGHDTN" +
> "CQIIFEGRNAPERADPMWTGGLNKHIIARGHFFQSNKFHFLERKFCEMAEIERPNFTCRTLDCQKFPWDDP"
> ));
>

--001a113f1416aea33a0549be7327
Content-Type: text/html; charset=UTF-8
Content-Transfer-Encoding: quoted-printable

<div dir=3D"ltr">Hi again, <br>I was using biojava-protein-disorder-4.1.<wb=
r>0, when I used 4.2.6, it worked fine.<br><div class=3D"gmail_extra"><br c=
lear=3D"all"><div><div class=3D"m_3960762871099811342gmail_signature" data-=
smartmail=3D"gmail_signature"><div dir=3D"ltr"><div dir=3D"ltr"><div dir=3D=
"ltr"><br></div></div></div></div></div>
<br><div class=3D"gmail_quote">On Thu, Mar 2, 2017 at 1:18 AM, Srikanth Bez=
awada <span dir=3D"ltr">&lt;<a href=3D"mailto:[email protected]" targ=
et=3D"_blank">[email protected]</a>&gt;</span> wrote:<br><blockquote =
class=3D"gmail_quote" style=3D"margin:0 0 0 .8ex;border-left:1px #ccc solid=
;padding-left:1ex"><div dir=3D"ltr">Hi BioJava,<br><br>I get the following =
stack trace when I try to find disorder scores using biojava protein disord=
er module. Can you please let me know the fix ? Thanks in advance.<br>
<div><br><br></div><div><div>Exception in thread &quot;main&quot; java.lang=
.ExceptionInInitializ<wbr>erError</div><div><span class=3D"m_39607628710998=
11342m_6924561765305433247gmail-Apple-tab-span" style=3D"white-space:pre-wr=
ap">	</span>at biojavausage.BioJavaUsage.main<wbr>(BioJavaUsage.java:<b>25<=
/b>)</div><div>Caused by: java.util.InputMismatchExcepti<wbr>on</div><div><=
span class=3D"m_3960762871099811342m_6924561765305433247gmail-Apple-tab-spa=
n" style=3D"white-space:pre-wrap">	</span>at java.util.Scanner.throwFor(Sca=
<wbr>nner.java:864)</div><div><span class=3D"m_3960762871099811342m_6924561=
765305433247gmail-Apple-tab-span" style=3D"white-space:pre-wrap">	</span>at=
 java.util.Scanner.next(Scanner<wbr>.java:1485)</div><div><span class=3D"m_=
3960762871099811342m_6924561765305433247gmail-Apple-tab-span" style=3D"whit=
e-space:pre-wrap">	</span>at java.util.Scanner.nextInt(Scan<wbr>ner.java:21=
17)</div><div><span class=3D"m_3960762871099811342m_6924561765305433247gmai=
l-Apple-tab-span" style=3D"white-space:pre-wrap">	</span>at java.util.Scann=
er.nextInt(Scan<wbr>ner.java:2076)</div><div><span class=3D"m_3960762871099=
811342m_6924561765305433247gmail-Apple-tab-span" style=3D"white-space:pre-w=
rap">	</span>at org.biojava.nbio.ronn.ModelLoa<wbr>der.loadModels(ModelLoad=
er.<wbr>java:175)</div><div><span class=3D"m_3960762871099811342m_692456176=
5305433247gmail-Apple-tab-span" style=3D"white-space:pre-wrap">	</span>at o=
rg.biojava.nbio.ronn.Jronn.&lt;c<wbr>linit&gt;(Jronn.java:55)</div><div><sp=
an class=3D"m_3960762871099811342m_6924561765305433247gmail-Apple-tab-span"=
 style=3D"white-space:pre-wrap">	</span>... 1 more</div></div><div><br></di=
v><div><br></div><div><br></div><div><div>Here is the line <b>25</b> which =
is the same line from the test folder of biojava github.<br><br><div>float[=
]<span style=3D"white-space:pre-wrap">   </span>rawProbabilityScores =3D Jr=
onn.getDisorderScores(new FastaSequence(&quot;name&quot;, &quot;LLRGRHLMNGT=
MIMRPWNFLNDHHFPKFF<wbr>PHLIEQQAIWLADWWRKKHC&quot; +</div><div><span class=
=3D"m_3960762871099811342m_6924561765305433247gmail-Apple-tab-span" style=
=3D"white-space:pre-wrap">				</span>&quot;RPLPTRAPTMDQWDHFALIQKHWTANLWF<wb=
r>LTFPFNDKWGWIWFLKDWTPGSADQAQRAC<wbr>TWFFCHGHDTN&quot; +</div><div><span cl=
ass=3D"m_3960762871099811342m_6924561765305433247gmail-Apple-tab-span" styl=
e=3D"white-space:pre-wrap">				</span>&quot;CQIIFEGRNAPERADPMWTGGLNKHIIAR<w=
br>GHFFQSNKFHFLERKFCEMAEIERPNFTCR<wbr>TLDCQKFPWDDP&quot; ));</div></div></d=
iv></div>
</blockquote></div><br></div></div>

--001a113f1416aea33a0549be7327--

--===============3043048822298900516==
Content-Type: text/plain; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
Content-Disposition: inline

_______________________________________________
Biojava-l mailing list  -  [email protected]
http://mailman.open-bio.org/mailman/listinfo/biojava-l
--===============3043048822298900516==--