blast parser
"Carlos M. MartÃnez Ortiz" <[email protected]> Fri, 25 May 2018 12:40:11 -0400
| Newsgroups | gmane.comp.java.bio.general |
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Hi, I have implemented a code using the recipe of BiojavaHowTo to parse =
a
BLAST output in xml. I=B4m using netbean IDE and biojava-1.7.jar =
library.
This is the error:
org.xml.sax.SAXException: Could not recognise the format of this file as =
one
supported by the framework.
At
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.j=
ava
:185)
at =
javaapplication1.BlastParser.main(BlastParser.java:41)
=20
the line 41 is:
parser.parse(new InputSource(is));
=20
Any help? Thanks you=20
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link=3D"#0563C1" vlink=3D"#954F72"><div class=3DWordSection1><p =
class=3DMsoNormal><span lang=3DEN-US>Hi, I have implemented a code using =
the recipe of BiojavaHowTo to parse a BLAST output in xml. I=B4m using =
netbean IDE and biojava-1.7.jar library.=A0 This is the =
error:<o:p></o:p></span></p><p class=3DMsoNormal><span =
lang=3DEN-US>org.xml.sax.SAXException: Could not recognise the format of =
this file as one supported by the framework.<o:p></o:p></span></p><p =
class=3DMsoNormal><span =
lang=3DEN-US>=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 At =
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.j=
ava:185)<o:p></o:p></span></p><p class=3DMsoNormal><span =
lang=3DEN-US>=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 at =
javaapplication1.BlastParser.main(BlastParser.java:41)<o:p></o:p></span><=
/p><p class=3DMsoNormal><span =
lang=3DEN-US><o:p> </o:p></span></p><p class=3DMsoNormal><span =
lang=3DEN-US>the line 41 is:<o:p></o:p></span></p><p =
class=3DMsoNormal><span lang=3DEN-US>parser.parse(new =
InputSource(is));<o:p></o:p></span></p><p class=3DMsoNormal><span =
lang=3DEN-US><o:p> </o:p></span></p><p class=3DMsoNormal><span =
lang=3DEN-US>Any help? Thanks you =
<o:p></o:p></span></p></div></body></html>
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