Re: ProtParam

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Thanks Spencer, I'll check it out.

Cheers,

Mark



On Mon, Oct 28, 2019 at 2:11 AM Spencer Bliven <[email protected]> wrote:

> Check out the aa-prop package, e.g. IPeptideProperties
> <https://biojava.org/docs/api5.3.0/org/biojava/nbio/aaproperties/IPeptideProperties.html>
> .
>
> -Spencer
>
>
> On 24 October 2019 at 23:18:20, Mark Fortner ([email protected]) wrote:
>
> I was wondering if BioJava has support for calculating ProtParam
> properties like:
>
>
>    - Theoretical MW
>
>
>    - MEC
>
>
>    - Theoretical PI
>
>
> I looked through the cookbook and through the API but I don't see any
> reference to ProtParam. Perhaps I'm missing something.
>
> Cheers,
>
> Mark
>
> _______________________________________________
> Biojava-l mailing list - [email protected]
> https://mailman.open-bio.org/mailman/listinfo/biojava-l
>
>

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<div dir=3D"ltr">Thanks Spencer, I&#39;ll check it out.<div><br clear=3D"al=
l"><div><div dir=3D"ltr" class=3D"gmail_signature" data-smartmail=3D"gmail_=
signature"><div>Cheers,</div><div><br></div>Mark<br><br></div></div><br></d=
iv></div><br><div class=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_att=
r">On Mon, Oct 28, 2019 at 2:11 AM Spencer Bliven &lt;<a href=3D"mailto:qua=
[email protected]">[email protected]</a>&gt; wrote:<br></div><blockquote cla=
ss=3D"gmail_quote" style=3D"margin:0px 0px 0px 0.8ex;border-left:1px solid =
rgb(204,204,204);padding-left:1ex"><div><div style=3D"font-family:Helvetica=
,Arial;font-size:13px">Check out the aa-prop package, e.g.=C2=A0<a href=3D"=
https://biojava.org/docs/api5.3.0/org/biojava/nbio/aaproperties/IPeptidePro=
perties.html" target=3D"_blank">IPeptideProperties</a>.</div><div style=3D"=
font-family:Helvetica,Arial;font-size:13px"><br></div><div style=3D"font-fa=
mily:Helvetica,Arial;font-size:13px">-Spencer</div> <br> <div></div> <br><p=
>On 24 October 2019 at 23:18:20, Mark Fortner (<a href=3D"mailto:phidias51@=
gmail.com" target=3D"_blank">[email protected]</a>) wrote:</p> <blockquot=
e type=3D"cite"><span><div><div></div><div>





<div dir=3D"ltr">I was wondering if BioJava has support for
calculating ProtParam properties like:
<div><br></div>
<blockquote style=3D"margin:0px 0px 0px 40px;border:none;padding:0px">
<div>
<div>
<ul>
<li>Theoretical MW</li>
</ul>
</div>
</div>
<div>
<div>
<ul>
<li>MEC</li>
</ul>
</div>
</div>
<div>
<div>
<ul>
<li>Theoretical PI</li>
</ul>
</div>
</div>
</blockquote>
<div>
<div><br></div>
<div>I looked through the cookbook and through the API but I don&#39;t
see any reference to ProtParam. Perhaps I&#39;m missing
something.</div>
<div><br></div>
<div>
<div>
<div dir=3D"ltr">
<div>Cheers,</div>
<div><br></div>
Mark<br>
<br></div>
</div>
</div>
</div>
</div>


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.org" target=3D"_blank">[email protected]</a>
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get=3D"_blank">https://mailman.open-bio.org/mailman/listinfo/biojava-l</a><=
/div></div></span></blockquote></div>
</blockquote></div>

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