Re: Regarding in issue on the openchart not found in biojava 6.0.4

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The openchart dependency is a sub-dependency of the forester library and it
is not in maven central but in a third party repo. In any case maven should
find the third party repo automatically as it is indicated in its
corresponding pom.xml file. Have you tried cleaning and rebuilding forcing
updates (-U)?

Jose

On Fri, 21 Jan 2022 at 21:58, Roshan Shrestha <
[email protected]> wrote:

> Hello,
> We are trying to change the version of the biojava from 4.0.0 to 6.0.4 in
> our application.
> We have upgraded the biojava-core & biojava-aa-prop from 4.0.0 > 6.0.4
>
> During the version bump, the build is failing which says the following:
>
> * What went wrong:
> Execution failed for task ':compileJava'.
> > Could not resolve all files for configuration ':compileClasspath'.
>    > Could not find openchart:openchart:1.4.2.
>      Searched in the following locations:
>        - https://repo.maven.apache.org/maven2/openchart/openchart/1.4.2/openchart-1.4.2.pom
>        - https://repo.maven.apache.org/maven2/openchart/openchart/1.4.2/openchart-1.4.2.jar
>      Required by:
>          project : > org.biojava:biojava-aa-prop:6.0.4 > org.biojava:biojava-structure:6.0.4 > org.biojava:biojava-alignment:6.0.4 > org.biojava.thirdparty:forester:1.039
>
>
> Looks like some internal dependency issue, cause we haven't used any
> openchart dependency previously. We could not figure out the issue from our
> side.
>
> This issue only happens when we use biojava version more than 6.0.0
> Any suggestion & help is appreciated. Thanks
> _______________________________________________
> Biojava-l mailing list  -  [email protected]
> https://mailman.open-bio.org/mailman/listinfo/biojava-l
>

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<div dir=3D"ltr">The openchart=C2=A0dependency is a sub-dependency of the f=
orester library and it is not in maven central but in a third party repo. I=
n any case maven should find the third party repo automatically as it is in=
dicated in its corresponding pom.xml file. Have you tried cleaning and rebu=
ilding forcing updates (-U)?<div><div><br></div><div>Jose</div></div></div>=
<br><div class=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_attr">On Fri=
, 21 Jan 2022 at 21:58, Roshan Shrestha &lt;<a href=3D"mailto:roshan.shrest=
[email protected]">[email protected]</a>&gt; wrote=
:<br></div><blockquote class=3D"gmail_quote" style=3D"margin:0px 0px 0px 0.=
8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir=3D"lt=
r">Hello,=C2=A0<br>We are trying=C2=A0to change the version of the biojava =
from 4.0.0 to 6.0.4 in our application.<br>We have upgraded the biojava-cor=
e &amp; biojava-aa-prop from 4.0.0 &gt; 6.0.4<br><br>During the version bum=
p, the build is failing which says the following:<br><pre style=3D"box-sizi=
ng:inherit;margin-top:4px;margin-bottom:4px;padding:8px;font-size:12px;line=
-height:1.50001;font-variant-ligatures:none;white-space:pre-wrap;word-break=
:normal;border-radius:4px;color:rgb(29,28,29);font-family:Monaco,Menlo,Cons=
olas,&quot;Courier New&quot;,monospace">* What went wrong:
Execution failed for task &#39;:compileJava&#39;.
&gt; Could not resolve all files for configuration &#39;:compileClasspath&#=
39;.
   &gt; Could not find openchart:openchart:1.4.2.
     Searched in the following locations:
       - <a href=3D"https://repo.maven.apache.org/maven2/openchart/openchar=
t/1.4.2/openchart-1.4.2.pom" rel=3D"noopener noreferrer" style=3D"box-sizin=
g:inherit;color:inherit;text-decoration-line:none" target=3D"_blank">https:=
//repo.maven.apache.org/maven2/openchart/openchart/1.4.2/openchart-1.4.2.po=
m</a>
       - <a href=3D"https://repo.maven.apache.org/maven2/openchart/openchar=
t/1.4.2/openchart-1.4.2.jar" rel=3D"noopener noreferrer" style=3D"box-sizin=
g:inherit;color:inherit;text-decoration-line:none" target=3D"_blank">https:=
//repo.maven.apache.org/maven2/openchart/openchart/1.4.2/openchart-1.4.2.ja=
r</a>
     Required by:
         project : &gt; org.biojava:biojava-aa-prop:6.0.4 &gt; org.biojava:=
biojava-structure:6.0.4 &gt; org.biojava:biojava-alignment:6.0.4 &gt; org.b=
iojava.thirdparty:forester:1.039</pre><br>Looks like some internal dependen=
cy issue, cause we haven&#39;t=C2=A0used any openchart=C2=A0dependency=C2=
=A0previously. We could not=C2=A0figure out the issue from our side.<br>=C2=
=A0<br>This issue only happens when we use biojava version more than 6.0.0<=
br>Any suggestion &amp; help is appreciated. Thanks</div>
_______________________________________________<br>
Biojava-l mailing list=C2=A0 -=C2=A0 <a href=3D"mailto:[email protected]=
g" target=3D"_blank">[email protected]</a><br>
<a href=3D"https://mailman.open-bio.org/mailman/listinfo/biojava-l" rel=3D"=
noreferrer" target=3D"_blank">https://mailman.open-bio.org/mailman/listinfo=
/biojava-l</a><br>
</blockquote></div>

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_______________________________________________
Biojava-l mailing list  -  [email protected]
https://mailman.open-bio.org/mailman/listinfo/biojava-l

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