Re: Chain order
Enrico Morelli <[email protected]> Fri, 13 Oct 2023 13:01:05 +0200
| Newsgroups | gmane.comp.java.bio.general |
|---|---|
| Message-ID | <[email protected]> |
--===============1745192783912661407== Content-Type: multipart/alternative; boundary=----IWW5P84AN30L9AA6YHEKYRJN8U7IW0 Content-Transfer-Encoding: 7bit ------IWW5P84AN30L9AA6YHEKYRJN8U7IW0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Yes, but in some case someone can use my program with pdb already processe= d=2E In this case I use these pdb directly without postprocessing and if th= e pdb contains different chains my program doesn't work well=2E Il 13 ottobre 2023 11:51:30 CEST, #AMR ALI MOKHTAR ALHOSSARY# <AMRA0001@e= =2Entu=2Eedu=2Esg> ha scritto: >In such a case, as you will not keep the original PDB file order, I recom= mend that you rename/ renumber your chains to get the order you want when y= ou read it first time before you write it=2E >Next time when you read it, it will keep the order you gave it=2E >Does that sound logic? ----------------------------------------------------------- =C2=A0 Enrico Morelli =C2=A0 System Administrator | Programmer | Web Developer =C2=A0 CERM - Polo Scientifico =C2=A0 via Sacconi, 6 - 50019 Sesto Fiorentino (FI) - ITALY =C2=A0----------------------------------------------------------- ------IWW5P84AN30L9AA6YHEKYRJN8U7IW0 Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: quoted-printable <html> <head> <meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Dus-ascii= "> </head> <body><div dir=3D"auto">Yes, but in some case someone=C2=A0 can use my pro= gram with pdb already processed=2E In this case I use these pdb directly wi= thout postprocessing and if the pdb contains different chains my program do= esn't work well=2E</div><br><br><div class=3D"gmail_quote"><div dir=3D"auto= ">Il 13 ottobre 2023 11:51:30 CEST, #AMR ALI MOKHTAR ALHOSSARY# <AMRA000= 1@e=2Entu=2Eedu=2Esg> ha scritto:</div><blockquote class=3D"gmail_quote"= style=3D"margin: 0pt 0pt 0pt 0=2E8ex; border-left: 1px solid rgb(204, 204,= 204); padding-left: 1ex;"> <div dir=3D"auto">In such a case, as you will not keep the original PDB fi= le order, I recommend that you rename/ renumber your chains to get the orde= r you want when you read it first time before you write it=2E </div> <div dir=3D"auto">Next time when you read it, it will keep the order you g= ave it=2E</div> <div dir=3D"auto">Does that sound logic? </div> </blockquote></div><div dir=3D"auto"><hr>=C2=A0 Enrico Morelli<br>=C2=A0 S= ystem Administrator | Programmer | Web Developer<br><br><br>=C2=A0 CERM - P= olo Scientifico<br>=C2=A0 via Sacconi, 6 - 50019 Sesto Fiorentino (FI) - IT= ALY<hr></div></body> </html> ------IWW5P84AN30L9AA6YHEKYRJN8U7IW0-- --===============1745192783912661407== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Biojava-l mailing list - [email protected] https://mailman.open-bio.org/mailman/listinfo/biojava-l --===============1745192783912661407==--