Re: Atom neighbors

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The tutorial contains a section on how to calculate contacts between atoms
of a structure:
https://github.com/biojava/biojava-tutorial/blob/master/structure/contact-map.md

Let us know if you have any troubles with that or other specific questions.

Jose


On Tue, 12 Dec 2023 at 07:03, Enrico Morelli <[email protected]> wrote:

> Dear,
>
> is there a way to get all the atoms that fall within 3.0A from a given
> atom (e.g. Zn) in the PDB.
>
>
> Thanks
> --
> -----------------------------------------------------------
>   Enrico Morelli
>   System Administrator | Programmer | Web Developer
>
>   CERM - Polo Scientifico
>   via Sacconi, 6 - 50019 Sesto Fiorentino (FI) - ITALY
> ------------------------------------------------------------
> _______________________________________________
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<div dir=3D"ltr">The tutorial contains a section on how to calculate contac=
ts between atoms of a structure:=C2=A0<a href=3D"https://github.com/biojava=
/biojava-tutorial/blob/master/structure/contact-map.md">https://github.com/=
biojava/biojava-tutorial/blob/master/structure/contact-map.md</a><div><br><=
/div><div>Let us know if you have any troubles with that or other specific =
questions.</div><div><br></div><div>Jose</div><div><br></div></div><br><div=
 class=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_attr">On Tue, 12 Dec=
 2023 at 07:03, Enrico Morelli &lt;<a href=3D"mailto:[email protected]"=
>[email protected]</a>&gt; wrote:<br></div><blockquote class=3D"gmail_q=
uote" style=3D"margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,2=
04);padding-left:1ex">Dear,<br>
<br>
is there a way to get all the atoms that fall within 3.0A from a given atom=
 (e.g. Zn) in the PDB.<br>
<br>
<br>
Thanks<br>
-- <br>
-----------------------------------------------------------<br>
=C2=A0 Enrico Morelli<br>
=C2=A0 System Administrator | Programmer | Web Developer<br>
<br>
=C2=A0 CERM - Polo Scientifico<br>
=C2=A0 via Sacconi, 6 - 50019 Sesto Fiorentino (FI) - ITALY<br>
------------------------------------------------------------<br>
_______________________________________________<br>
Biojava-l mailing list=C2=A0 -=C2=A0 <a href=3D"mailto:[email protected]=
g" target=3D"_blank">[email protected]</a><br>
<a href=3D"https://mailman.open-bio.org/mailman/listinfo/biojava-l" rel=3D"=
noreferrer" target=3D"_blank">https://mailman.open-bio.org/mailman/listinfo=
/biojava-l</a><br>
</blockquote></div>

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