Re: How to install Bio::AlignIO?

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On Thu, Jan 3, 2013 at 10:51 AM, Peng Yu <[email protected]> wrote:

> >> ppm does not find Bio::AlignIO. But it is available on cpan. Does
> >> anybody know how to install Bio::AlignIO? Also is there a way to check
> >> what perl module is available in ActivePerl?
> >
> > You did not mention the platform you use ActivePerl on. For Windows;
> > the solution would be to install the cpan client by installing the
> > 'cpan' package via PPM, and then installing your Bio module via cpan.
>
> My platform is mac.
>

Bio::AlignIO is part of the BioPerl distribution.  It seems to have a lot
of build failures on PPM, but it does seem to be available for ActivePerl
5.14 on OS X:

http://code.activestate.com/ppm/BioPerl/

Cheers,
-Jan

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<div class=3D"gmail_quote">On Thu, Jan 3, 2013 at 10:51 AM, Peng Yu <span d=
ir=3D"ltr">&lt;<a href=3D"mailto:[email protected]" target=3D"_blank">pen=
[email protected]</a>&gt;</span> wrote:<br><blockquote class=3D"gmail_quote"=
 style=3D"margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div class=3D"im">&gt;&gt; ppm does not find Bio::AlignIO. But it is availa=
ble on cpan. Does<br>
&gt;&gt; anybody know how to install Bio::AlignIO? Also is there a way to c=
heck<br>
&gt;&gt; what perl module is available in ActivePerl?<br>
&gt;<br>
&gt; You did not mention the platform you use ActivePerl on. For Windows;<b=
r>
&gt; the solution would be to install the cpan client by installing the<br>
&gt; &#39;cpan&#39; package via PPM, and then installing your Bio module vi=
a cpan.<br>
<br>
</div>My platform is mac.<br></blockquote><div><br>Bio::AlignIO is part of =
the BioPerl distribution.=A0 It seems to have a lot of build failures on PP=
M, but it does seem to be available for ActivePerl 5.14 on OS X:<br><br>
<a href=3D"http://code.activestate.com/ppm/BioPerl/">http://code.activestat=
e.com/ppm/BioPerl/</a><br><br>Cheers,<br>-Jan<br>=A0<br></div></div>

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