Getting pairwise alignment scores for existing multiple alignment
Alexey Morozov <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <CAK=7cMOkPqofM6j12X77kBFhUb6ZPNFXNeN3YEHsQZU1r+yeDg@mail.gmail.com> |
Dear colleagues, Is there a method in bioperl that will calculate pairwise alignment scores for any given pair of genes in MSA (according to a given matrix and gap opening/extension cost)? It seems that Bio::SimpleAlign methods only work with score if it has been described in MSA file and can only hold a general multiple sequence alignment score. -- Alexey Morozov, LIN SB RAS, bioinformatics group. Irkutsk, Russia. _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l