Re: An example to query PMID given GEO accession number?
"Fields, Christopher J" <[email protected]>
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
Should be feasible via elink, possibly starting with using a search term against GEO, then using the link between GEO and pubmed (via GEO’s UID) to get related PMIDs. chris > On Jun 9, 2015, at 9:47 AM, Peng Yu <[email protected]> wrote: > > Hi, > > I am looking for an example to to query GEO to get the PMID associated > with a GEO accession number. > > For example, GSE39684 has the associated PMID 23028701. Can this be > done with bioperl? Does anybody have an example script for doing so? > Thanks. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > [email protected] > http://mailman.open-bio.org/mailman/listinfo/bioperl-l _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l