Re: using Bio::SeqIO to convert from table to genbank format ..... attribute_map example
Mark A Jensen <[email protected]> Mon, 21 Sep 2015 11:18:16 -0400
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
+1! On Mon, Sep 21, 2015 at 11:04 AM, Fields, Christopher J < [email protected] [[email protected]] > wrote: Awesome, thanks Brian! chris On Sep 21, 2015, at 9:32 AM, Brian Osborne < [email protected] [[email protected]] > wrote: Malcolm, Done, in master. That “can not write to a generic …” error was due to the fact that write_seq() is not implemented for SeqIO::table, but someone forgot to put an “empty” write_seq() method into the module to catch any attempts. Fixed. Brian O. On Sep 21, 2015, at 9:18 AM, Brian Osborne < [email protected] [[email protected]] > wrote: Working on this …. On Sep 14, 2015, at 10:44 AM, Cook, Malcolm < [email protected] [[email protected]] > wrote: '$out = Bio::SeqIO->new(-format => qq{table}); _______________________________________________ Bioperl-l mailing list [email protected] [[email protected]] http://mailman.open-bio.org/mailman/listinfo/bioperl-l [http://mailman.open-bio.org/mailman/listinfo/bioperl-l] _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l