Re: module Bio::TreeIO
"Fields, Christopher J" <[email protected]> Tue, 10 May 2016 18:08:51 +0000
| Newsgroups | gmane.comp.lang.perl.bio.general |
|---|---|
| Message-ID | <[email protected]> |
On May 10, 2016, at 10:51 AM, Youensclark, Ken - (kyclark) <[email protected]> wrote: > > On May 10, 2016, at 5:54 AM, lskatz <[email protected]> wrote: >> >> That's what I thought originally too but the R package made it look like >> there might be some magic bootstrapping going on with distances alone. If >> there truly is no distance-matrix bootstrapping algorithm then I am left to >> my devices and at least I can make use of assess_bootstrap(). > > I'm following this thread with interest not because I have anything to add about the Perl but because I've been using MinHash in an all-vs-all sample comparison application that runs on the stampede cluster at TACC: > > https://github.com/hurwitzlab/stampede-mash > > I'd love to know what all you're doing with a distance matrix as far as analysis and visualization. > > Ken Nice, we’ve been looking into mash as well for the same reasons. Nothing to report yet unfortunately (we haven’t even started). chris _______________________________________________ Bioperl-l mailing list [email protected] http://mailman.open-bio.org/mailman/listinfo/bioperl-l